Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV3A0A0B4J244 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TRAV3A0A0B4J244 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 BX276092.2-201ENST00000417668 665 ntBASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 CDCA4P2-201ENST00000441182 718 ntBASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 AC105036.2-201ENST00000569468 176 ntBASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 MARS-234ENST00000630571 216 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 MARS-235ENST00000630803 183 ntTSL 3 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 MKRN4P-201ENST00000444706 1521 ntBASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV3A0A0B4J244 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 AF201337.1-201ENST00000520239 748 ntBASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 AC093503.3-201ENST00000624917 2352 ntBASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV3A0A0B4J244 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 AC116351.2-201ENST00000606540 1585 ntBASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.74■□□□□ 0.11
TRAV3A0A0B4J244 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV3A0A0B4J244 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.73■□□□□ 0.11
TRAV3A0A0B4J244 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV3A0A0B4J244 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV3A0A0B4J244 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV3A0A0B4J244 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms