Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 IGHVII-51-2-201ENST00000519778 259 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC8.12□□□□□ -1.11
COL9A1P20849 TRIM51DP-201ENST00000529746 596 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 PTP4A1P6-201ENST00000531034 478 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC044860.3-201ENST00000559957 368 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 MTCO3P23-201ENST00000561363 289 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC024267.2-201ENST00000582737 417 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 POLR3B-202ENST00000539066 4118 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 CRNKL1-202ENST00000377340 4406 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 AC068870.3-201ENST00000625077 2536 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 SCMH1-204ENST00000361705 3115 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 THBS3-201ENST00000368378 3145 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC8.12□□□□□ -1.11
COL9A1P20849 LINC01304-204ENST00000454455 2454 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 RAD9B-203ENST00000409246 2794 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 XIRP2-206ENST00000409728 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 NUDT13-201ENST00000349051 1835 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 RAD21L1-203ENST00000409241 1808 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 PTK2B-205ENST00000420218 3941 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 CD302-202ENST00000429078 3803 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 ABCA17P-204ENST00000494925 3478 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL9A1P20849 AL162171.3-201ENST00000617439 3178 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 NUP58P1-201ENST00000502546 1738 ntBASIC8.12□□□□□ -1.11
COL9A1P20849 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC8.12□□□□□ -1.11
COL9A1P20849 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
COL9A1P20849 NEMP1-202ENST00000379391 5370 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 AC093768.1-201ENST00000505987 2173 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 FGFR2-206ENST00000358487 4255 ntAPPRIS ALT1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 BBS9-204ENST00000396127 3914 ntTSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 RNU6-1097P-201ENST00000363586 107 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 Y_RNA.339-201ENST00000365325 102 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 U3.14-201ENST00000365363 227 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 RNU6-1013P-201ENST00000384180 107 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 PPIAP30-201ENST00000415473 519 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 AF274573.1-201ENST00000430535 494 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 ERLEC1P1-201ENST00000433806 578 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC098828.1-201ENST00000436164 440 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AL138787.1-202ENST00000437804 898 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 TIMM8BP2-201ENST00000445940 251 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 RPS4XP10-201ENST00000465034 731 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 RN7SL655P-201ENST00000486087 298 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 TTC39CP1-201ENST00000512513 755 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC006499.2-201ENST00000513470 337 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC027308.1-201ENST00000517993 110 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 MRPS16P1-201ENST00000523462 412 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 TOMM20P1-201ENST00000534518 427 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 NCAPGP2-201ENST00000557911 754 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 AC245389.1-201ENST00000605141 529 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AL136139.1-201ENST00000605568 222 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC087623.4-201ENST00000606593 695 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 AC097641.3-201ENST00000613523 464 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 CASC19-260ENST00000641828 2001 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 SOX5-210ENST00000537393 2769 ntTSL 5 BASIC8.11□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms