RNA–Protein interactions for RNA: ENST00000377340.6

CRNKL1-202, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene CRNKL1, Length 4,406 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-202ENST00000377340 DCAF8L2P0C7V8 631 aa16.1■□□□□ 0.17
CRNKL1-202ENST00000377340 NISCHQ9Y2I1 1504 aa16.06■□□□□ 0.16
CRNKL1-202ENST00000377340 SHROOM4Q9ULL8 1493 aa14.9□□□□□ -0.02
CRNKL1-202ENST00000377340 SUPT5HO00267 1087 aaKnown RBP14.78□□□□□ -0.04
CRNKL1-202ENST00000377340 ABCC9O60706 1549 aa14.26□□□□□ -0.13
CRNKL1-202ENST00000377340 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
CRNKL1-202ENST00000377340 PABPN1Q86U42 306 aaKnown RBP eCLIP14.03□□□□□ -0.16
CRNKL1-202ENST00000377340 FAM9AQ8IZU1 332 aaPredicted RBP13.93□□□□□ -0.18
CRNKL1-202ENST00000377340 RANGAP1P46060 587 aaPredicted RBP13.76□□□□□ -0.21
CRNKL1-202ENST00000377340 TRIM41Q8WV44 630 aa13.65□□□□□ -0.22
CRNKL1-202ENST00000377340 TTBK1Q5TCY1 1321 aaPredicted RBP13.57□□□□□ -0.24
CRNKL1-202ENST00000377340 ATP1B4Q9UN42 357 aaPredicted RBP13.52□□□□□ -0.24
CRNKL1-202ENST00000377340 APLP2Q06481 763 aa13.51□□□□□ -0.25
CRNKL1-202ENST00000377340 UBTFP17480 764 aaKnown RBP13.46□□□□□ -0.25
CRNKL1-202ENST00000377340 SCRIBQ14160 1630 aa13.32□□□□□ -0.28
CRNKL1-202ENST00000377340 CCDC180Q9P1Z9 1646 aa13.3□□□□□ -0.28
CRNKL1-202ENST00000377340 ZCCHC6Q5VYS8 1495 aaKnown RBP13.24□□□□□ -0.29
CRNKL1-202ENST00000377340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
CRNKL1-202ENST00000377340 FBLN2P98095 1184 aa13.2□□□□□ -0.3
CRNKL1-202ENST00000377340 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
CRNKL1-202ENST00000377340 PPARGC1BQ86YN6 1023 aaKnown RBP13.19□□□□□ -0.3
CRNKL1-202ENST00000377340 CHIC1Q5VXU3 224 aa13.13□□□□□ -0.31
CRNKL1-202ENST00000377340 RB1CC1Q8TDY2 1594 aa13.13□□□□□ -0.31
CRNKL1-202ENST00000377340 LOC105371045A0A1W2PR82 267 aa13.12□□□□□ -0.31
CRNKL1-202ENST00000377340 MYT1LQ9UL68 1186 aa13.04□□□□□ -0.32
CRNKL1-202ENST00000377340 PCGF6Q9BYE7 350 aa13.03□□□□□ -0.32
CRNKL1-202ENST00000377340 NACADO15069 1562 aa12.98□□□□□ -0.33
CRNKL1-202ENST00000377340 ITGAEP38570 1179 aa12.96□□□□□ -0.34
CRNKL1-202ENST00000377340 ARID3CA6NKF2 412 aa12.89□□□□□ -0.35
CRNKL1-202ENST00000377340 P3H3Q8IVL6 736 aa12.87□□□□□ -0.35
CRNKL1-202ENST00000377340 CCER1Q8TC90 406 aaPredicted RBP12.78□□□□□ -0.36
CRNKL1-202ENST00000377340 CECR2Q9BXF3 1484 aa12.77□□□□□ -0.37
CRNKL1-202ENST00000377340 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
CRNKL1-202ENST00000377340 RSF1Q96T23 1441 aaPredicted RBP12.74□□□□□ -0.37
CRNKL1-202ENST00000377340 BAZ1BQ9UIG0 1483 aaKnown RBP12.71□□□□□ -0.37
CRNKL1-202ENST00000377340 CHMP7Q8WUX9 453 aaPredicted RBP12.68□□□□□ -0.38
CRNKL1-202ENST00000377340 FAM50AQ14320 339 aaKnown RBP12.66□□□□□ -0.38
CRNKL1-202ENST00000377340 ERCC6Q03468 1493 aa12.65□□□□□ -0.38
CRNKL1-202ENST00000377340 DCAF1Q9Y4B6 1507 aa12.64□□□□□ -0.39
CRNKL1-202ENST00000377340 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
CRNKL1-202ENST00000377340 ZNF777Q9ULD5 760 aaPredicted RBP12.57□□□□□ -0.4
CRNKL1-202ENST00000377340 BAZ1AQ9NRL2 1556 aaPredicted RBP12.56□□□□□ -0.4
CRNKL1-202ENST00000377340 TRIM26Q12899 539 aaPredicted RBP12.53□□□□□ -0.4
CRNKL1-202ENST00000377340 MROH2BQ7Z745 1585 aa12.51□□□□□ -0.41
CRNKL1-202ENST00000377340 PLPPR3Q6T4P5 718 aa12.51□□□□□ -0.41
CRNKL1-202ENST00000377340 TRIM52Q96A61 297 aa12.5□□□□□ -0.41
CRNKL1-202ENST00000377340 POLR3GLQ9BT43 218 aa12.49□□□□□ -0.41
CRNKL1-202ENST00000377340 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
CRNKL1-202ENST00000377340 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
CRNKL1-202ENST00000377340 WRNQ14191 1432 aaPredicted RBP eCLIP12.44□□□□□ -0.42
CRNKL1-202ENST00000377340 KCNH8Q96L42 1107 aa12.43□□□□□ -0.42
CRNKL1-202ENST00000377340 MYO15BQ96JP2 1530 aa12.41□□□□□ -0.42
CRNKL1-202ENST00000377340 DNAJC5BQ9UF47 199 aa12.38□□□□□ -0.43
CRNKL1-202ENST00000377340 PDS5BQ9NTI5 1447 aa12.35□□□□□ -0.43
CRNKL1-202ENST00000377340 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
CRNKL1-202ENST00000377340 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
CRNKL1-202ENST00000377340 TDRD9Q8NDG6 1382 aaKnown RBP12.35□□□□□ -0.43
CRNKL1-202ENST00000377340 CCDC88BA6NC98 1476 aa12.35□□□□□ -0.43
CRNKL1-202ENST00000377340 ATAD2BQ9ULI0 1458 aa12.34□□□□□ -0.43
CRNKL1-202ENST00000377340 SLC4A1APQ9BWU0 796 aaKnown RBP12.34□□□□□ -0.43
CRNKL1-202ENST00000377340 ZEB1P37275 1124 aaPredicted RBP12.34□□□□□ -0.43
CRNKL1-202ENST00000377340 ZNF326Q5BKZ1 582 aaKnown RBP12.34□□□□□ -0.43
CRNKL1-202ENST00000377340 TRHP20396 242 aaPredicted RBP12.33□□□□□ -0.44
CRNKL1-202ENST00000377340 ESF1Q9H501 851 aaKnown RBP12.33□□□□□ -0.44
CRNKL1-202ENST00000377340 BCANQ96GW7 911 aa12.32□□□□□ -0.44
CRNKL1-202ENST00000377340 CADPSQ9ULU8 1353 aa12.32□□□□□ -0.44
CRNKL1-202ENST00000377340 CHIC2Q9UKJ5 165 aa12.3□□□□□ -0.44
CRNKL1-202ENST00000377340 KIF27Q86VH2 1401 aa12.29□□□□□ -0.44
CRNKL1-202ENST00000377340 WIZO95785 1651 aa12.29□□□□□ -0.44
CRNKL1-202ENST00000377340 CUX2O14529 1486 aa12.27□□□□□ -0.45
CRNKL1-202ENST00000377340 PLEKHD1A6NEE1 506 aa12.25□□□□□ -0.45
CRNKL1-202ENST00000377340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.25□□□□□ -0.454e-7■■■□□ 17.8
CRNKL1-202ENST00000377340 CHGAP10645 457 aaKnown RBP12.24□□□□□ -0.45
CRNKL1-202ENST00000377340 SOGA1O94964 1423 aa12.24□□□□□ -0.45
CRNKL1-202ENST00000377340 MTUS2Q5JR59 1369 aa12.22□□□□□ -0.45
CRNKL1-202ENST00000377340 SENP3Q9H4L4 574 aaPredicted RBP12.2□□□□□ -0.46
CRNKL1-202ENST00000377340 CARMIL1Q5VZK9 1371 aa12.2□□□□□ -0.46
CRNKL1-202ENST00000377340 CLIP1P30622 1438 aa12.2□□□□□ -0.46
CRNKL1-202ENST00000377340 SMARCA4P51532 1647 aa12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 ABCC8Q09428 1581 aa12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 TSPY4P0CV99 314 aa12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 TSPY10P0CW01 314 aa12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 EIF4G1Q04637 1599 aaKnown RBP12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 STAG3Q9UJ98 1225 aa12.19□□□□□ -0.46
CRNKL1-202ENST00000377340 YTHDC1Q96MU7 727 aaKnown RBP12.17□□□□□ -0.46
CRNKL1-202ENST00000377340 ARID4BQ4LE39 1312 aaPredicted RBP12.15□□□□□ -0.46
CRNKL1-202ENST00000377340 CEP164Q9UPV0 1460 aa12.14□□□□□ -0.47
CRNKL1-202ENST00000377340 CYB5RLQ6IPT4 315 aa12.14□□□□□ -0.47
CRNKL1-202ENST00000377340 FANCD2Q9BXW9 1451 aa12.13□□□□□ -0.47
CRNKL1-202ENST00000377340 TOP2AP11388 1531 aaKnown RBP12.13□□□□□ -0.47
CRNKL1-202ENST00000377340 EEA1Q15075 1411 aa12.1□□□□□ -0.47
CRNKL1-202ENST00000377340 RRP7BPQ9NSQ0 103 aa12.1□□□□□ -0.47
CRNKL1-202ENST00000377340 CFDP1Q9UEE9 299 aaPredicted RBP12.1□□□□□ -0.47
CRNKL1-202ENST00000377340 NCAPD3P42695 1498 aa12.09□□□□□ -0.47
CRNKL1-202ENST00000377340 GOLGA3Q08378 1498 aa12.09□□□□□ -0.47
CRNKL1-202ENST00000377340 NESP48681 1621 aa12.08□□□□□ -0.48
CRNKL1-202ENST00000377340 HRCP23327 699 aa12.08□□□□□ -0.48
CRNKL1-202ENST00000377340 OSCARQ8IYS5 282 aa12.08□□□□□ -0.48
CRNKL1-202ENST00000377340 CC2D2AQ9P2K1 1620 aa12.07□□□□□ -0.48
CRNKL1-202ENST00000377340 CEP162Q5TB80 1403 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms