Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 AC098934.4-201ENST00000564127 592 ntBASIC15.86■□□□□ 0.13
FOXA2Q9Y261 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXA2Q9Y261 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 AC023632.3-201ENST00000521633 145 ntBASIC15.85■□□□□ 0.13
FOXA2Q9Y261 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA2Q9Y261 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 TNXA-203ENST00000507684 2038 ntBASIC15.84■□□□□ 0.13
FOXA2Q9Y261 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA2Q9Y261 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
FOXA2Q9Y261 AL020996.1-203ENST00000536896 2307 ntBASIC15.83■□□□□ 0.12
FOXA2Q9Y261 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms