Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 PCDHAC2-203ENST00000615316 3011 ntBASIC22.56■■□□□ 1.2
DDX41Q9UJV9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 KRT17P2-201ENST00000300992 1314 ntBASIC22.56■■□□□ 1.2
DDX41Q9UJV9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX41Q9UJV9 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 NBPF21P-201ENST00000425093 1451 ntBASIC22.55■■□□□ 1.2
DDX41Q9UJV9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 AL121906.2-201ENST00000621597 723 ntBASIC22.55■■□□□ 1.2
DDX41Q9UJV9 REXO1L12P-201ENST00000622156 912 ntBASIC22.55■■□□□ 1.2
DDX41Q9UJV9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX41Q9UJV9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 KRT16P5-201ENST00000455284 522 ntBASIC22.54■■□□□ 1.2
DDX41Q9UJV9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 AL031963.3-201ENST00000606441 850 ntBASIC22.54■■□□□ 1.2
DDX41Q9UJV9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 KRT8P20-201ENST00000423953 1409 ntBASIC22.54■■□□□ 1.2
DDX41Q9UJV9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 FP700111.2-201ENST00000619190 1892 ntBASIC22.54■■□□□ 1.2
DDX41Q9UJV9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX41Q9UJV9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 AC006128.1-201ENST00000624704 1661 ntBASIC22.53■■□□□ 1.2
DDX41Q9UJV9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC22.53■■□□□ 1.2
DDX41Q9UJV9 AC018445.3-201ENST00000624177 1945 ntBASIC22.53■■□□□ 1.2
DDX41Q9UJV9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX41Q9UJV9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
DDX41Q9UJV9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms