Protein–RNA interactions for Protein: Q96JH7

VCPIP1, Deubiquitinating protein VCIP135, humanhuman

Predictions only

Length 1,222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPIP1Q96JH7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 KRT18P6-201ENST00000555540 1265 ntBASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 AL121829.2-201ENST00000620908 328 ntBASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCPIP1Q96JH7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 BX323043.1-201ENST00000641006 1765 ntBASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.67■□□□□ 0.9
VCPIP1Q96JH7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPIP1Q96JH7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 AP006587.1-201ENST00000534129 1502 ntBASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 YBX1P10-201ENST00000444752 975 ntBASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 AC008687.6-201ENST00000596318 630 ntBASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VCPIP1Q96JH7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VCPIP1Q96JH7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCPIP1Q96JH7 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.64■□□□□ 0.9
VCPIP1Q96JH7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VCPIP1Q96JH7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCPIP1Q96JH7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 AL032819.2-201ENST00000624543 2162 ntBASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
VCPIP1Q96JH7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms