Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 AL355355.2-201ENST00000442321 338 ntBASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
SH3RF1Q7Z6J0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 KRT8P9-201ENST00000558927 1449 ntBASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SH3RF1Q7Z6J0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 AC005521.1-201ENST00000393351 872 ntBASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 AF186192.3-201ENST00000583427 947 ntBASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SH3RF1Q7Z6J0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
SH3RF1Q7Z6J0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 RER1-204ENST00000378518 522 ntTSL 3 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SH3RF1Q7Z6J0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 AL390719.1-204ENST00000412397 1219 ntBASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 AC145285.6-201ENST00000604632 637 ntBASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SH3RF1Q7Z6J0 TMEM179-206ENST00000616017 1645 ntBASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms