Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC33.07■■■□□ 2.89
CUX1P39880 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.88
CUX1P39880 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
CUX1P39880 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
CUX1P39880 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC33.07■■■□□ 2.88
CUX1P39880 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC33.07■■■□□ 2.88
CUX1P39880 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
CUX1P39880 CA15P1-201ENST00000481698 905 ntBASIC33.07■■■□□ 2.88
CUX1P39880 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC33.07■■■□□ 2.88
CUX1P39880 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC33.07■■■□□ 2.88
CUX1P39880 AC093458.2-201ENST00000623150 629 ntBASIC33.07■■■□□ 2.88
CUX1P39880 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC33.07■■■□□ 2.88
CUX1P39880 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CUX1P39880 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CUX1P39880 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC33.06■■■□□ 2.88
CUX1P39880 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC33.06■■■□□ 2.88
CUX1P39880 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CUX1P39880 AP003041.3-201ENST00000527151 707 ntBASIC33.06■■■□□ 2.88
CUX1P39880 ETFA-216ENST00000560726 942 ntTSL 3 BASIC33.06■■■□□ 2.88
CUX1P39880 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
CUX1P39880 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC33.06■■■□□ 2.88
CUX1P39880 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC33.06■■■□□ 2.88
CUX1P39880 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CUX1P39880 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC33.06■■■□□ 2.88
CUX1P39880 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC33.05■■■□□ 2.88
CUX1P39880 HOMER2P1-201ENST00000455653 964 ntBASIC33.05■■■□□ 2.88
CUX1P39880 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC33.05■■■□□ 2.88
CUX1P39880 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC33.05■■■□□ 2.88
CUX1P39880 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC33.05■■■□□ 2.88
CUX1P39880 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
CUX1P39880 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 KRT8P41-201ENST00000533985 1514 ntBASIC33.05■■■□□ 2.88
CUX1P39880 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 AC092720.2-201ENST00000602388 1665 ntBASIC33.05■■■□□ 2.88
CUX1P39880 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC33.05■■■□□ 2.88
CUX1P39880 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC33.05■■■□□ 2.88
CUX1P39880 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CUX1P39880 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC33.04■■■□□ 2.88
CUX1P39880 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC33.04■■■□□ 2.88
CUX1P39880 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC33.04■■■□□ 2.88
CUX1P39880 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
CUX1P39880 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CUX1P39880 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC33.04■■■□□ 2.88
CUX1P39880 BX119927.1-201ENST00000636596 1552 ntBASIC33.04■■■□□ 2.88
CUX1P39880 HCG4P8-203ENST00000443049 980 ntBASIC33.03■■■□□ 2.88
CUX1P39880 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC33.03■■■□□ 2.88
CUX1P39880 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CUX1P39880 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CUX1P39880 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC33.03■■■□□ 2.88
CUX1P39880 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC33.03■■■□□ 2.88
CUX1P39880 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC33.03■■■□□ 2.88
CUX1P39880 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CUX1P39880 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CUX1P39880 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CUX1P39880 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC33.03■■■□□ 2.88
CUX1P39880 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC33.03■■■□□ 2.88
CUX1P39880 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
CUX1P39880 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC33.02■■■□□ 2.88
CUX1P39880 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC33.02■■■□□ 2.88
CUX1P39880 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC33.02■■■□□ 2.88
CUX1P39880 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CUX1P39880 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC33.02■■■□□ 2.88
CUX1P39880 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC33.02■■■□□ 2.88
CUX1P39880 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC33.02■■■□□ 2.88
CUX1P39880 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CUX1P39880 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC33.02■■■□□ 2.88
CUX1P39880 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC33.02■■■□□ 2.88
CUX1P39880 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC33.02■■■□□ 2.88
CUX1P39880 CLEC4GP1-201ENST00000596555 870 ntBASIC33.02■■■□□ 2.88
CUX1P39880 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC33.02■■■□□ 2.88
CUX1P39880 AC069148.1-201ENST00000608741 768 ntBASIC33.02■■■□□ 2.88
CUX1P39880 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC33.01■■■□□ 2.88
CUX1P39880 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC33.01■■■□□ 2.88
CUX1P39880 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC33.01■■■□□ 2.88
CUX1P39880 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC33.01■■■□□ 2.87
CUX1P39880 AL450487.1-201ENST00000426799 995 ntBASIC33.01■■■□□ 2.87
CUX1P39880 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC33.01■■■□□ 2.87
CUX1P39880 PTK2-216ENST00000519881 863 ntTSL 3 BASIC33.01■■■□□ 2.87
CUX1P39880 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC33.01■■■□□ 2.87
CUX1P39880 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC33.01■■■□□ 2.87
CUX1P39880 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC33.01■■■□□ 2.87
CUX1P39880 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
CUX1P39880 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CUX1P39880 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC33■■■□□ 2.87
CUX1P39880 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC33■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms