Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC4P09017 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
HOXC4P09017 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC4P09017 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.2■□□□□ 0.66
HOXC4P09017 AP000525.1-201ENST00000608286 694 ntBASIC19.2■□□□□ 0.66
HOXC4P09017 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.2■□□□□ 0.66
HOXC4P09017 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HOXC4P09017 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXC4P09017 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.2■□□□□ 0.66
HOXC4P09017 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.2■□□□□ 0.66
HOXC4P09017 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
HOXC4P09017 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HOXC4P09017 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HOXC4P09017 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXC4P09017 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HOXC4P09017 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 AP005242.2-201ENST00000580065 1175 ntBASIC19.19■□□□□ 0.66
HOXC4P09017 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.19■□□□□ 0.66
HOXC4P09017 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXC4P09017 AC133561.5-201ENST00000635547 218 ntBASIC19.19■□□□□ 0.66
HOXC4P09017 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXC4P09017 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HOXC4P09017 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXC4P09017 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HOXC4P09017 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
HOXC4P09017 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXC4P09017 AP000692.2-201ENST00000608391 879 ntBASIC19.18■□□□□ 0.66
HOXC4P09017 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 RCC2P6-201ENST00000526625 1557 ntBASIC19.18■□□□□ 0.66
HOXC4P09017 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC4P09017 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 AC092667.1-201ENST00000434301 2586 ntBASIC19.17■□□□□ 0.66
HOXC4P09017 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HOXC4P09017 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC4P09017 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 MIR1238-201ENST00000408483 83 ntBASIC19.17■□□□□ 0.66
HOXC4P09017 AC004951.3-201ENST00000418645 1148 ntBASIC19.17■□□□□ 0.66
HOXC4P09017 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXC4P09017 AL160286.2-201ENST00000567150 934 ntBASIC19.17■□□□□ 0.66
HOXC4P09017 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC4P09017 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXC4P09017 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
HOXC4P09017 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HOXC4P09017 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC4P09017 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC4P09017 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC4P09017 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HOXC4P09017 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 TCF3P1-201ENST00000423021 1937 ntBASIC19.16■□□□□ 0.66
HOXC4P09017 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 Z85996.1-201ENST00000494644 937 ntBASIC19.16■□□□□ 0.66
HOXC4P09017 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.16■□□□□ 0.66
HOXC4P09017 AC145285.6-201ENST00000604632 637 ntBASIC19.16■□□□□ 0.66
HOXC4P09017 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms