Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CBX4O00257 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CBX4O00257 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.08■□□□□ 0.81
CBX4O00257 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.08■□□□□ 0.8
CBX4O00257 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CBX4O00257 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.08■□□□□ 0.8
CBX4O00257 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CBX4O00257 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CBX4O00257 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 YBX1P10-201ENST00000444752 975 ntBASIC20.07■□□□□ 0.8
CBX4O00257 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.07■□□□□ 0.8
CBX4O00257 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CBX4O00257 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CBX4O00257 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CBX4O00257 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.07■□□□□ 0.8
CBX4O00257 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CBX4O00257 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.06■□□□□ 0.8
CBX4O00257 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.06■□□□□ 0.8
CBX4O00257 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CBX4O00257 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CBX4O00257 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.06■□□□□ 0.8
CBX4O00257 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CBX4O00257 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.06■□□□□ 0.8
CBX4O00257 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.06■□□□□ 0.8
CBX4O00257 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.06■□□□□ 0.8
CBX4O00257 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.06■□□□□ 0.8
CBX4O00257 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.06■□□□□ 0.8
CBX4O00257 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.06■□□□□ 0.8
CBX4O00257 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.06■□□□□ 0.8
CBX4O00257 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.06■□□□□ 0.8
CBX4O00257 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CBX4O00257 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.06■□□□□ 0.8
CBX4O00257 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CBX4O00257 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CBX4O00257 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.05■□□□□ 0.8
CBX4O00257 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.05■□□□□ 0.8
CBX4O00257 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CBX4O00257 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CBX4O00257 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.05■□□□□ 0.8
CBX4O00257 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CBX4O00257 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CBX4O00257 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 AC009237.14-201ENST00000609975 1594 ntBASIC20.04■□□□□ 0.8
CBX4O00257 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CBX4O00257 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CBX4O00257 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms