Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHMP1AQ9HD42 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 BX119927.1-201ENST00000636596 1552 ntBASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.88■□□□□ 0.29
CHMP1AQ9HD42 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 AC005332.7-201ENST00000614046 2005 ntBASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 AL356652.1-201ENST00000615962 565 ntBASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 MYCNOS-205ENST00000641950 531 ntBASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 TMEM179-206ENST00000616017 1645 ntBASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 LETM1P2-201ENST00000597330 2178 ntBASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
CHMP1AQ9HD42 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 AL691432.2-201ENST00000607222 2038 ntBASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms