Protein–RNA interactions for Protein: Q96B54

ZNF428, Zinc finger protein 428, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF428Q96B54 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC25.34■■□□□ 1.65
ZNF428Q96B54 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
ZNF428Q96B54 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.34■■□□□ 1.65
ZNF428Q96B54 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC25.34■■□□□ 1.65
ZNF428Q96B54 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC25.34■■□□□ 1.65
ZNF428Q96B54 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
ZNF428Q96B54 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZNF428Q96B54 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.33■■□□□ 1.65
ZNF428Q96B54 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC25.33■■□□□ 1.64
ZNF428Q96B54 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
ZNF428Q96B54 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
ZNF428Q96B54 AC125437.2-201ENST00000625180 2167 ntBASIC25.32■■□□□ 1.64
ZNF428Q96B54 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 MIR718-201ENST00000390190 70 ntBASIC25.32■■□□□ 1.64
ZNF428Q96B54 RPS2P55-201ENST00000397318 883 ntBASIC25.32■■□□□ 1.64
ZNF428Q96B54 AC107956.1-201ENST00000494359 873 ntBASIC25.32■■□□□ 1.64
ZNF428Q96B54 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.32■■□□□ 1.64
ZNF428Q96B54 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZNF428Q96B54 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 ECEL1P3-201ENST00000427961 737 ntBASIC25.31■■□□□ 1.64
ZNF428Q96B54 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZNF428Q96B54 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.31■■□□□ 1.64
ZNF428Q96B54 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZNF428Q96B54 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZNF428Q96B54 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZNF428Q96B54 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 YBX1P10-201ENST00000444752 975 ntBASIC25.3■■□□□ 1.64
ZNF428Q96B54 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZNF428Q96B54 AC110285.5-201ENST00000611501 352 ntBASIC25.3■■□□□ 1.64
ZNF428Q96B54 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZNF428Q96B54 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC25.3■■□□□ 1.64
ZNF428Q96B54 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
ZNF428Q96B54 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.29■■□□□ 1.64
ZNF428Q96B54 PNN-205ENST00000556530 601 ntTSL 2 BASIC25.29■■□□□ 1.64
ZNF428Q96B54 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.29■■□□□ 1.64
ZNF428Q96B54 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZNF428Q96B54 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.29■■□□□ 1.64
ZNF428Q96B54 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC25.29■■□□□ 1.64
ZNF428Q96B54 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms