Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.8■■□□□ 1.08
HPS3Q969F9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.8■■□□□ 1.08
HPS3Q969F9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 UNC93B5-201ENST00000530315 699 ntBASIC21.8■■□□□ 1.08
HPS3Q969F9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.8■■□□□ 1.08
HPS3Q969F9 AC008403.3-201ENST00000598924 454 ntBASIC21.8■■□□□ 1.08
HPS3Q969F9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
HPS3Q969F9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.8■■□□□ 1.08
HPS3Q969F9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.8■■□□□ 1.08
HPS3Q969F9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HPS3Q969F9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.79■■□□□ 1.08
HPS3Q969F9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.79■■□□□ 1.08
HPS3Q969F9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.79■■□□□ 1.08
HPS3Q969F9 UNC93B4-201ENST00000505679 747 ntBASIC21.79■■□□□ 1.08
HPS3Q969F9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.79■■□□□ 1.08
HPS3Q969F9 AC008687.6-201ENST00000596318 630 ntBASIC21.79■■□□□ 1.08
HPS3Q969F9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.79■■□□□ 1.08
HPS3Q969F9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
HPS3Q969F9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HPS3Q969F9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.78■■□□□ 1.08
HPS3Q969F9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.78■■□□□ 1.08
HPS3Q969F9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
HPS3Q969F9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.78■■□□□ 1.08
HPS3Q969F9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.78■■□□□ 1.08
HPS3Q969F9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.78■■□□□ 1.08
HPS3Q969F9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HPS3Q969F9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
HPS3Q969F9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
HPS3Q969F9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.77■■□□□ 1.08
HPS3Q969F9 KRT18P6-201ENST00000555540 1265 ntBASIC21.77■■□□□ 1.08
HPS3Q969F9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HPS3Q969F9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.77■■□□□ 1.08
HPS3Q969F9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.77■■□□□ 1.08
HPS3Q969F9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HPS3Q969F9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HPS3Q969F9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.76■■□□□ 1.07
HPS3Q969F9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.76■■□□□ 1.07
HPS3Q969F9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HPS3Q969F9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.76■■□□□ 1.07
HPS3Q969F9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
HPS3Q969F9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.76■■□□□ 1.07
HPS3Q969F9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HPS3Q969F9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.76■■□□□ 1.07
HPS3Q969F9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.76■■□□□ 1.07
HPS3Q969F9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HPS3Q969F9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HPS3Q969F9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms