Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 HLA-DPB2-205ENST00000435074 1188 ntBASIC10.86□□□□□ -0.67
UBR4Q5T4S7 PNN-202ENST00000553331 656 ntTSL 3 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC10.86□□□□□ -0.67
UBR4Q5T4S7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AP000523.1-201ENST00000398242 1049 ntBASIC10.85□□□□□ -0.67
UBR4Q5T4S7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AC106028.4-201ENST00000614509 607 ntBASIC10.85□□□□□ -0.67
UBR4Q5T4S7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AC092597.1-201ENST00000487352 616 ntBASIC10.85□□□□□ -0.67
UBR4Q5T4S7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
UBR4Q5T4S7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 BX276092.5-203ENST00000456199 560 ntBASIC10.84□□□□□ -0.67
UBR4Q5T4S7 MIR6752-201ENST00000618442 71 ntBASIC10.84□□□□□ -0.67
UBR4Q5T4S7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 CIB2-208ENST00000560618 804 ntTSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 PNN-205ENST00000556530 601 ntTSL 2 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC10.84□□□□□ -0.67
UBR4Q5T4S7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC10.83□□□□□ -0.67
UBR4Q5T4S7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 AP006288.1-201ENST00000446065 395 ntBASIC10.83□□□□□ -0.68
UBR4Q5T4S7 FGFR3P6-201ENST00000457012 610 ntBASIC10.83□□□□□ -0.68
UBR4Q5T4S7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC10.83□□□□□ -0.68
UBR4Q5T4S7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms