Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.05■□□□□ 0.64
FOXA1P55317 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA1P55317 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 AC018553.1-201ENST00000616682 1458 ntBASIC19.04■□□□□ 0.64
FOXA1P55317 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.04■□□□□ 0.64
FOXA1P55317 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 CDCA4P2-201ENST00000441182 718 ntBASIC19.04■□□□□ 0.64
FOXA1P55317 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.04■□□□□ 0.64
FOXA1P55317 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
FOXA1P55317 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
FOXA1P55317 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA1P55317 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
FOXA1P55317 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.04■□□□□ 0.64
FOXA1P55317 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
FOXA1P55317 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
FOXA1P55317 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.03■□□□□ 0.64
FOXA1P55317 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.03■□□□□ 0.64
FOXA1P55317 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
FOXA1P55317 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA1P55317 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.03■□□□□ 0.64
FOXA1P55317 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
FOXA1P55317 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.02■□□□□ 0.64
FOXA1P55317 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 MKRN4P-201ENST00000444706 1521 ntBASIC19.02■□□□□ 0.64
FOXA1P55317 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 AC093503.3-201ENST00000624917 2352 ntBASIC19.02■□□□□ 0.64
FOXA1P55317 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.02■□□□□ 0.64
FOXA1P55317 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.02■□□□□ 0.64
FOXA1P55317 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.02■□□□□ 0.64
FOXA1P55317 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.02■□□□□ 0.64
FOXA1P55317 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
FOXA1P55317 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.02■□□□□ 0.64
FOXA1P55317 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA1P55317 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
FOXA1P55317 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.02■□□□□ 0.63
FOXA1P55317 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.02■□□□□ 0.63
FOXA1P55317 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
FOXA1P55317 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.01■□□□□ 0.63
FOXA1P55317 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.01■□□□□ 0.63
FOXA1P55317 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.01■□□□□ 0.63
FOXA1P55317 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 AC105036.2-201ENST00000569468 176 ntBASIC19.01■□□□□ 0.63
FOXA1P55317 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
FOXA1P55317 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
FOXA1P55317 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
FOXA1P55317 AC116351.2-201ENST00000606540 1585 ntBASIC19.01■□□□□ 0.63
FOXA1P55317 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA1P55317 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms