Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TNFP01375 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.24■□□□□ 0.67
TNFP01375 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TNFP01375 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.24■□□□□ 0.67
TNFP01375 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFP01375 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.23■□□□□ 0.67
TNFP01375 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TNFP01375 AC079598.2-202ENST00000546624 1451 ntBASIC19.23■□□□□ 0.67
TNFP01375 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TNFP01375 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFP01375 TMEM179-206ENST00000616017 1645 ntBASIC19.23■□□□□ 0.67
TNFP01375 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.23■□□□□ 0.67
TNFP01375 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFP01375 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TNFP01375 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.23■□□□□ 0.67
TNFP01375 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TNFP01375 FSCN1P1-201ENST00000568912 1481 ntBASIC19.22■□□□□ 0.67
TNFP01375 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.22■□□□□ 0.67
TNFP01375 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.22■□□□□ 0.67
TNFP01375 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
TNFP01375 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.22■□□□□ 0.67
TNFP01375 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TNFP01375 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 MIR1238-201ENST00000408483 83 ntBASIC19.22■□□□□ 0.67
TNFP01375 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.22■□□□□ 0.67
TNFP01375 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.22■□□□□ 0.67
TNFP01375 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 AP000525.1-201ENST00000608286 694 ntBASIC19.22■□□□□ 0.67
TNFP01375 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.22■□□□□ 0.67
TNFP01375 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TNFP01375 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.22■□□□□ 0.67
TNFP01375 AP005212.1-201ENST00000581547 1997 ntBASIC19.22■□□□□ 0.67
TNFP01375 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TNFP01375 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TNFP01375 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.22■□□□□ 0.67
TNFP01375 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.21■□□□□ 0.67
TNFP01375 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TNFP01375 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
TNFP01375 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.21■□□□□ 0.67
TNFP01375 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.21■□□□□ 0.67
TNFP01375 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.21■□□□□ 0.67
TNFP01375 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 AC026271.3-201ENST00000571884 352 ntBASIC19.21■□□□□ 0.67
TNFP01375 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.21■□□□□ 0.67
TNFP01375 AC097493.4-201ENST00000641197 219 ntBASIC19.21■□□□□ 0.67
TNFP01375 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.21■□□□□ 0.67
TNFP01375 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
TNFP01375 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TNFP01375 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TNFP01375 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.21■□□□□ 0.67
TNFP01375 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TNFP01375 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.2■□□□□ 0.66
TNFP01375 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 FAM210CP-201ENST00000445714 574 ntBASIC19.2■□□□□ 0.66
TNFP01375 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.2■□□□□ 0.66
TNFP01375 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TNFP01375 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.2■□□□□ 0.66
TNFP01375 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.2■□□□□ 0.66
TNFP01375 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.2■□□□□ 0.66
TNFP01375 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.2■□□□□ 0.66
TNFP01375 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TNFP01375 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms