Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MESTP1-201ENST00000404287 994 ntBASIC24.78■■□□□ 1.56
NPHP1O15259 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC24.78■■□□□ 1.56
NPHP1O15259 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC24.78■■□□□ 1.56
NPHP1O15259 AP005242.2-201ENST00000580065 1175 ntBASIC24.78■■□□□ 1.56
NPHP1O15259 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC24.78■■□□□ 1.56
NPHP1O15259 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP1O15259 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP1O15259 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP1O15259 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP1O15259 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC24.77■■□□□ 1.56
NPHP1O15259 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
NPHP1O15259 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
NPHP1O15259 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC24.77■■□□□ 1.56
NPHP1O15259 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 YBX1P10-201ENST00000444752 975 ntBASIC24.77■■□□□ 1.56
NPHP1O15259 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 SLC25A1P4-201ENST00000567977 778 ntBASIC24.77■■□□□ 1.56
NPHP1O15259 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC24.77■■□□□ 1.56
NPHP1O15259 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
NPHP1O15259 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24.77■■□□□ 1.56
NPHP1O15259 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP1O15259 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
NPHP1O15259 PLK5-205ENST00000642079 1969 ntBASIC24.76■■□□□ 1.55
NPHP1O15259 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.76■■□□□ 1.55
NPHP1O15259 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.76■■□□□ 1.55
NPHP1O15259 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
NPHP1O15259 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
NPHP1O15259 AC011506.1-201ENST00000474329 610 ntBASIC24.76■■□□□ 1.55
NPHP1O15259 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC24.76■■□□□ 1.55
NPHP1O15259 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC24.76■■□□□ 1.55
NPHP1O15259 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC24.76■■□□□ 1.55
NPHP1O15259 AC006011.2-201ENST00000621313 1158 ntBASIC24.76■■□□□ 1.55
NPHP1O15259 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP1O15259 AC005229.4-201ENST00000610085 2198 ntBASIC24.76■■□□□ 1.55
NPHP1O15259 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
NPHP1O15259 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
NPHP1O15259 TSPY14P-201ENST00000303979 915 ntBASIC24.75■■□□□ 1.55
NPHP1O15259 AK4P3-201ENST00000418260 669 ntBASIC24.75■■□□□ 1.55
NPHP1O15259 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.75■■□□□ 1.55
NPHP1O15259 LINC01238-205ENST00000567549 1107 ntBASIC24.75■■□□□ 1.55
NPHP1O15259 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC24.75■■□□□ 1.55
NPHP1O15259 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC24.75■■□□□ 1.55
NPHP1O15259 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 AC116351.2-201ENST00000606540 1585 ntBASIC24.75■■□□□ 1.55
NPHP1O15259 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
NPHP1O15259 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC24.74■■□□□ 1.55
NPHP1O15259 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.74■■□□□ 1.55
NPHP1O15259 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
NPHP1O15259 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.74■■□□□ 1.55
NPHP1O15259 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC24.73■■□□□ 1.55
NPHP1O15259 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
NPHP1O15259 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC24.73■■□□□ 1.55
NPHP1O15259 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC24.73■■□□□ 1.55
NPHP1O15259 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 AC004980.1-204ENST00000429707 299 ntBASIC24.73■■□□□ 1.55
NPHP1O15259 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.73■■□□□ 1.55
NPHP1O15259 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
NPHP1O15259 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.73■■□□□ 1.55
NPHP1O15259 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
NPHP1O15259 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC24.72■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms