Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC006557.6-201ENST00000623071 864 ntBASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC083880.1-201ENST00000608266 535 ntBASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC116562.4-201ENST00000641316 2276 ntBASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SERPINH1P1-201ENST00000419794 1249 ntBASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TMPOP1-202ENST00000424642 1267 ntBASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC091874.3-201ENST00000512672 1195 ntBASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 KRT8P17-201ENST00000453110 1448 ntBASIC26.48■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SENP3-EIF4A1A0A087X0R7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
SENP3-EIF4A1A0A087X0R7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC26.45■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms