Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 ANKS1B-201ENST00000329257 996 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RNU6-501P-201ENST00000364072 100 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RNU4-91P-201ENST00000364778 135 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RNU12-2P-201ENST00000364789 156 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 SUGT1P1-201ENST00000379514 476 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 PCOTH-201ENST00000382133 805 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 MSRB1P1-201ENST00000396851 354 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RPL23AP29-201ENST00000397284 453 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 U3.31-201ENST00000408113 216 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RPSAP59-201ENST00000421048 890 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 MTCO3P1-205ENST00000422088 832 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 GAPDHP69-201ENST00000425504 1008 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC010975.2-201ENST00000427781 588 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC130472.1-201ENST00000427885 309 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC073069.1-201ENST00000428657 441 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 DDX11L10-201ENST00000430178 571 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 PYHIN5P-201ENST00000431627 723 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AL353653.1-202ENST00000435177 539 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 NDUFA5P7-201ENST00000452914 242 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RN7SL55P-201ENST00000464534 297 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RN7SL414P-201ENST00000469545 294 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RN7SL635P-201ENST00000492123 296 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC106822.1-201ENST00000502647 526 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 RPL37P25-201ENST00000507308 276 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC114801.1-201ENST00000512633 297 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 ANKRD55-205ENST00000513241 626 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC239860.2-201ENST00000525886 270 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AP003033.2-201ENST00000528901 805 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 GSTM3-206ENST00000540225 678 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AP000619.1-201ENST00000540293 1000 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC087481.2-201ENST00000565492 330 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC090415.1-201ENST00000581877 847 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 MIR4642-201ENST00000583943 82 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC005479.3-201ENST00000602790 431 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC007262.1-201ENST00000604099 321 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC126118.1-201ENST00000607744 628 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC244196.3-201ENST00000614171 374 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 MIR6807-201ENST00000621968 92 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 MFSD8-218ENST00000641186 4448 ntBASIC5.9□□□□□ -1.47
CCDC140Q96MF4 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 GABRR3-202ENST00000472788 1416 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 MSL3P1-202ENST00000440028 1468 ntBASIC5.9□□□□□ -1.47
CCDC140Q96MF4 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC140Q96MF4 AIFM1-205ENST00000460436 1925 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 TNFAIP8-204ENST00000503646 2502 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms