RNA–Protein interactions for RNA: ENST00000452852.1

LINC00393-202, long intergenic non-protein coding RNA 393, humanhuman

TSL 3 BASIC

Gene LINC00393, Length 485 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00393-202ENST00000452852 AEBP2Q6ZN18 517 aaPredicted RBP23.76■■□□□ 1.39
LINC00393-202ENST00000452852 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
LINC00393-202ENST00000452852 SENP3Q9H4L4 574 aaPredicted RBP20.57■□□□□ 0.88
LINC00393-202ENST00000452852 PHF23Q9BUL5 403 aaPredicted RBP20.14■□□□□ 0.81
LINC00393-202ENST00000452852 FOXD1Q16676 465 aa19.15■□□□□ 0.66
LINC00393-202ENST00000452852 POTEDQ86YR6 584 aa19.11■□□□□ 0.65
LINC00393-202ENST00000452852 MSH5O43196 834 aa18.36■□□□□ 0.53
LINC00393-202ENST00000452852 PIAS4Q8N2W9 510 aaPredicted RBP17.81■□□□□ 0.44
LINC00393-202ENST00000452852 PLPPR3Q6T4P5 718 aa17.37■□□□□ 0.37
LINC00393-202ENST00000452852 PPP6R1Q9UPN7 881 aa17.26■□□□□ 0.35
LINC00393-202ENST00000452852 ADRA2BP18089 450 aa17.22■□□□□ 0.35
LINC00393-202ENST00000452852 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
LINC00393-202ENST00000452852 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
LINC00393-202ENST00000452852 MAPK8IP2Q13387 824 aaPredicted RBP16.03■□□□□ 0.16
LINC00393-202ENST00000452852 SCAF1Q9H7N4 1312 aaKnown RBP15.95■□□□□ 0.14
LINC00393-202ENST00000452852 DCAF8L1A6NGE4 600 aa15.65■□□□□ 0.1
LINC00393-202ENST00000452852 RNF39Q9H2S5 420 aa15.51■□□□□ 0.07
LINC00393-202ENST00000452852 C1QBPQ07021 282 aaKnown RBP15.31■□□□□ 0.04
LINC00393-202ENST00000452852 PPP4R3CPQ6ZMV5 832 aa15.31■□□□□ 0.04
LINC00393-202ENST00000452852 HOXD11P31277 338 aaPredicted RBP15.21■□□□□ 0.03
LINC00393-202ENST00000452852 RNF216Q9NWF9 866 aaPredicted RBP14.95□□□□□ -0.02
LINC00393-202ENST00000452852 CNKSR2Q8WXI2 1034 aa14.9□□□□□ -0.02
LINC00393-202ENST00000452852 POTEHQ6S545 545 aa14.88□□□□□ -0.03
LINC00393-202ENST00000452852 DNAJC5BQ9UF47 199 aa14.88□□□□□ -0.03
LINC00393-202ENST00000452852 NCBP3Q53F19 620 aaKnown RBP14.86□□□□□ -0.03
LINC00393-202ENST00000452852 KCNA4P22459 653 aa14.85□□□□□ -0.03
LINC00393-202ENST00000452852 NPM3O75607 178 aaKnown RBP14.67□□□□□ -0.06
LINC00393-202ENST00000452852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
LINC00393-202ENST00000452852 CAPN15O75808 1086 aa14.27□□□□□ -0.13
LINC00393-202ENST00000452852 DSG3P32926 999 aa14.25□□□□□ -0.13
LINC00393-202ENST00000452852 SPINK5Q9NQ38 1064 aaPredicted RBP14.13□□□□□ -0.15
LINC00393-202ENST00000452852 SLC4A1APQ9BWU0 796 aaKnown RBP14.11□□□□□ -0.15
LINC00393-202ENST00000452852 U3KPZ7 1027 aaPredicted RBP14.1□□□□□ -0.15
LINC00393-202ENST00000452852 SLC4A2P04920 1241 aa13.88□□□□□ -0.19
LINC00393-202ENST00000452852 APLP2Q06481 763 aa13.85□□□□□ -0.19
LINC00393-202ENST00000452852 TRHP20396 242 aaPredicted RBP13.84□□□□□ -0.19
LINC00393-202ENST00000452852 ZNF219Q9P2Y4 722 aaPredicted RBP13.81□□□□□ -0.2
LINC00393-202ENST00000452852 ABCB7O75027 752 aa13.8□□□□□ -0.2
LINC00393-202ENST00000452852 RBM42Q9BTD8 480 aaKnown RBP13.76□□□□□ -0.21
LINC00393-202ENST00000452852 CHRDL2Q6WN34 429 aa13.69□□□□□ -0.22
LINC00393-202ENST00000452852 FOXD4L1Q9NU39 408 aa13.68□□□□□ -0.22
LINC00393-202ENST00000452852 ZBTB22O15209 634 aa13.67□□□□□ -0.22
LINC00393-202ENST00000452852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.62□□□□□ -0.23
LINC00393-202ENST00000452852 HNRNPUL2Q1KMD3 747 aaKnown RBP13.62□□□□□ -0.23
LINC00393-202ENST00000452852 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
LINC00393-202ENST00000452852 SP7Q8TDD2 431 aaPredicted RBP13.59□□□□□ -0.23
LINC00393-202ENST00000452852 MYCNP04198 464 aaPredicted RBP13.53□□□□□ -0.24
LINC00393-202ENST00000452852 CSRNP3Q8WYN3 585 aa13.5□□□□□ -0.25
LINC00393-202ENST00000452852 SAMD1Q6SPF0 538 aaPredicted RBP13.45□□□□□ -0.26
LINC00393-202ENST00000452852 POLA2Q14181 598 aa13.25□□□□□ -0.29
LINC00393-202ENST00000452852 HAX1O00165 279 aa13.24□□□□□ -0.29
LINC00393-202ENST00000452852 AKT1S1Q96B36 256 aa13.22□□□□□ -0.29
LINC00393-202ENST00000452852 ATF5Q9Y2D1 282 aaPredicted RBP13.22□□□□□ -0.29
LINC00393-202ENST00000452852 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
LINC00393-202ENST00000452852 PIP4P2Q8N4L2 257 aa13.15□□□□□ -0.3
LINC00393-202ENST00000452852 REM2Q8IYK8 340 aaPredicted RBP13.06□□□□□ -0.32
LINC00393-202ENST00000452852 ZBTB12Q9Y330 459 aaPredicted RBP13.03□□□□□ -0.32
LINC00393-202ENST00000452852 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.34
LINC00393-202ENST00000452852 PITPNM1O00562 1244 aa12.91□□□□□ -0.34
LINC00393-202ENST00000452852 OSCARQ8IYS5 282 aa12.84□□□□□ -0.35
LINC00393-202ENST00000452852 EVX2Q03828 476 aa12.82□□□□□ -0.36
LINC00393-202ENST00000452852 LHX8Q68G74 356 aa12.76□□□□□ -0.37
LINC00393-202ENST00000452852 PLSCR2Q9NRY7 297 aa12.66□□□□□ -0.38
LINC00393-202ENST00000452852 FBLN2P98095 1184 aa12.63□□□□□ -0.39
LINC00393-202ENST00000452852 MKRN4PQ13434 485 aaPredicted RBP12.63□□□□□ -0.39
LINC00393-202ENST00000452852 PRKAR2AP13861 404 aaKnown RBP12.61□□□□□ -0.39
LINC00393-202ENST00000452852 GABBR2O75899 941 aa12.58□□□□□ -0.4
LINC00393-202ENST00000452852 C19orf67A6NJJ6 358 aa12.56□□□□□ -0.4
LINC00393-202ENST00000452852 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
LINC00393-202ENST00000452852 SPDYE2BA6NHP3 402 aa12.49□□□□□ -0.41
LINC00393-202ENST00000452852 SPDYE6P0CI01 402 aa12.49□□□□□ -0.41
LINC00393-202ENST00000452852 SPDYE2Q495Y8 402 aa12.49□□□□□ -0.41
LINC00393-202ENST00000452852 SPDYE1Q8NFV5 336 aaPredicted RBP12.49□□□□□ -0.41
LINC00393-202ENST00000452852 ZNF692Q9BU19 519 aaPredicted RBP12.33□□□□□ -0.44
LINC00393-202ENST00000452852 SPDYE4A6NLX3 237 aa12.28□□□□□ -0.44
LINC00393-202ENST00000452852 SSUH2Q9Y2M2 353 aa12.28□□□□□ -0.44
LINC00393-202ENST00000452852 CHADLQ6NUI6 762 aa12.27□□□□□ -0.45
LINC00393-202ENST00000452852 CLCN6P51797 869 aa12.25□□□□□ -0.45
LINC00393-202ENST00000452852 POTEIP0CG38 1075 aa12.22□□□□□ -0.45
LINC00393-202ENST00000452852 PRR29P0C7W0 189 aa12.21□□□□□ -0.45
LINC00393-202ENST00000452852 FKBP8Q14318 412 aa12.21□□□□□ -0.45
LINC00393-202ENST00000452852 DCBLD2Q96PD2 775 aa12.21□□□□□ -0.45
LINC00393-202ENST00000452852 CD44P16070 742 aaKnown RBP12.19□□□□□ -0.46
LINC00393-202ENST00000452852 PABPN1Q86U42 306 aaKnown RBP eCLIP12.16□□□□□ -0.46
LINC00393-202ENST00000452852 POTEMA6NI47 508 aa12.05□□□□□ -0.48
LINC00393-202ENST00000452852 PROM2Q8N271 834 aa12.05□□□□□ -0.48
LINC00393-202ENST00000452852 FARP1Q9Y4F1 1045 aaPredicted RBP12.04□□□□□ -0.48
LINC00393-202ENST00000452852 POTEGQ6S5H5 508 aa11.99□□□□□ -0.49
LINC00393-202ENST00000452852 OTUD5Q96G74 571 aa11.97□□□□□ -0.49
LINC00393-202ENST00000452852 PCDH10Q9P2E7 1040 aa11.97□□□□□ -0.49
LINC00393-202ENST00000452852 ZNF579Q8NAF0 562 aaKnown RBP11.92□□□□□ -0.5
LINC00393-202ENST00000452852 STAG3Q9UJ98 1225 aa11.91□□□□□ -0.5
LINC00393-202ENST00000452852 ZRANB1Q9UGI0 708 aa11.9□□□□□ -0.5
LINC00393-202ENST00000452852 POTEB2H3BUK9 544 aa11.8□□□□□ -0.52
LINC00393-202ENST00000452852 GALR2O43603 387 aaPredicted RBP11.8□□□□□ -0.52
LINC00393-202ENST00000452852 FBXO3Q9UK99 471 aa11.77□□□□□ -0.53
LINC00393-202ENST00000452852 PAK3O75914 559 aaPredicted RBP11.76□□□□□ -0.53
LINC00393-202ENST00000452852 CREBZFQ9NS37 354 aa11.71□□□□□ -0.53
LINC00393-202ENST00000452852 MAMSTRQ6ZN01 415 aa11.7□□□□□ -0.54
LINC00393-202ENST00000452852 MIER1Q8N108 512 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms