RNA–Protein interactions for RNA: ENST00000426840.1

LINC01049-201, Transcript of long intergenic non-protein coding RNA 1049, humanhuman

TSL 1 (best) BASIC

Gene LINC01049, Length 742 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01049-201ENST00000426840 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
LINC01049-201ENST00000426840 CHIC1Q5VXU3 224 aa21.73■■□□□ 1.07
LINC01049-201ENST00000426840 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
LINC01049-201ENST00000426840 SENP3Q9H4L4 574 aaPredicted RBP19.02■□□□□ 0.64
LINC01049-201ENST00000426840 NISCHQ9Y2I1 1504 aa17.73■□□□□ 0.43
LINC01049-201ENST00000426840 FOXD1Q16676 465 aa17.71■□□□□ 0.43
LINC01049-201ENST00000426840 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
LINC01049-201ENST00000426840 ADRA2BP18089 450 aa16.95■□□□□ 0.3
LINC01049-201ENST00000426840 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
LINC01049-201ENST00000426840 PIAS4Q8N2W9 510 aaPredicted RBP16.7■□□□□ 0.26
LINC01049-201ENST00000426840 MSH5O43196 834 aa16.34■□□□□ 0.21
LINC01049-201ENST00000426840 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
LINC01049-201ENST00000426840 PPP4R3CPQ6ZMV5 832 aa15.51■□□□□ 0.07
LINC01049-201ENST00000426840 MAPK8IP2Q13387 824 aaPredicted RBP15.44■□□□□ 0.06
LINC01049-201ENST00000426840 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
LINC01049-201ENST00000426840 ABCC9O60706 1549 aa15.24■□□□□ 0.03
LINC01049-201ENST00000426840 POTEDQ86YR6 584 aa15.19■□□□□ 0.02
LINC01049-201ENST00000426840 DMRT2Q9Y5R5 561 aa15.16■□□□□ 0.02
LINC01049-201ENST00000426840 CNKSR2Q8WXI2 1034 aa15.06■□□□□ 0
LINC01049-201ENST00000426840 NCBP3Q53F19 620 aaKnown RBP15.02■□□□□ -0
LINC01049-201ENST00000426840 KCNA4P22459 653 aa15.01□□□□□ -0.01
LINC01049-201ENST00000426840 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.04
LINC01049-201ENST00000426840 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
LINC01049-201ENST00000426840 RNF216Q9NWF9 866 aaPredicted RBP14.79□□□□□ -0.04
LINC01049-201ENST00000426840 ZCCHC6Q5VYS8 1495 aaKnown RBP14.78□□□□□ -0.04
LINC01049-201ENST00000426840 HOXD11P31277 338 aaPredicted RBP14.76□□□□□ -0.05
LINC01049-201ENST00000426840 NACADO15069 1562 aa14.71□□□□□ -0.05
LINC01049-201ENST00000426840 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
LINC01049-201ENST00000426840 MYO15BQ96JP2 1530 aa14.68□□□□□ -0.06
LINC01049-201ENST00000426840 DCAF1Q9Y4B6 1507 aa14.67□□□□□ -0.06
LINC01049-201ENST00000426840 DCAF8L1A6NGE4 600 aa14.65□□□□□ -0.06
LINC01049-201ENST00000426840 UNC13AQ9UPW8 1703 aa14.36□□□□□ -0.11
LINC01049-201ENST00000426840 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
LINC01049-201ENST00000426840 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
LINC01049-201ENST00000426840 BICRAQ9NZM4 1560 aa14.28□□□□□ -0.12
LINC01049-201ENST00000426840 SLC4A1APQ9BWU0 796 aaKnown RBP14.26□□□□□ -0.13
LINC01049-201ENST00000426840 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
LINC01049-201ENST00000426840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.14
LINC01049-201ENST00000426840 SHROOM4Q9ULL8 1493 aa14.09□□□□□ -0.15
LINC01049-201ENST00000426840 SLC4A2P04920 1241 aa14.04□□□□□ -0.16
LINC01049-201ENST00000426840 RNF39Q9H2S5 420 aa14□□□□□ -0.17
LINC01049-201ENST00000426840 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
LINC01049-201ENST00000426840 EIF4G1Q04637 1599 aaKnown RBP13.86□□□□□ -0.19
LINC01049-201ENST00000426840 CECR2Q9BXF3 1484 aa13.83□□□□□ -0.2
LINC01049-201ENST00000426840 ZBTB22O15209 634 aa13.81□□□□□ -0.2
LINC01049-201ENST00000426840 CACNB1Q02641 598 aaPredicted RBP13.81□□□□□ -0.2
LINC01049-201ENST00000426840 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
LINC01049-201ENST00000426840 C1QBPQ07021 282 aaKnown RBP13.8□□□□□ -0.2
LINC01049-201ENST00000426840 CC2D2AQ9P2K1 1620 aa13.78□□□□□ -0.2
LINC01049-201ENST00000426840 EHMT2Q96KQ7 1210 aa13.77□□□□□ -0.21
LINC01049-201ENST00000426840 BAZ1AQ9NRL2 1556 aaPredicted RBP13.71□□□□□ -0.22
LINC01049-201ENST00000426840 SMARCA4P51532 1647 aa13.7□□□□□ -0.22
LINC01049-201ENST00000426840 MROH2BQ7Z745 1585 aa13.68□□□□□ -0.22
LINC01049-201ENST00000426840 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
LINC01049-201ENST00000426840 ATAD2BQ9ULI0 1458 aa13.63□□□□□ -0.23
LINC01049-201ENST00000426840 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
LINC01049-201ENST00000426840 RSF1Q96T23 1441 aaPredicted RBP13.59□□□□□ -0.23
LINC01049-201ENST00000426840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
LINC01049-201ENST00000426840 HNRNPUL2Q1KMD3 747 aaKnown RBP13.59□□□□□ -0.23
LINC01049-201ENST00000426840 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
LINC01049-201ENST00000426840 SPINK5Q9NQ38 1064 aaPredicted RBP13.58□□□□□ -0.24
LINC01049-201ENST00000426840 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
LINC01049-201ENST00000426840 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.24
LINC01049-201ENST00000426840 SAMD1Q6SPF0 538 aaPredicted RBP13.56□□□□□ -0.24
LINC01049-201ENST00000426840 CAPN15O75808 1086 aa13.55□□□□□ -0.24
LINC01049-201ENST00000426840 WIZO95785 1651 aa13.52□□□□□ -0.25
LINC01049-201ENST00000426840 HMGXB3Q12766 1538 aa13.5□□□□□ -0.25
LINC01049-201ENST00000426840 BAZ1BQ9UIG0 1483 aaKnown RBP13.48□□□□□ -0.25
LINC01049-201ENST00000426840 APLP2Q06481 763 aa13.48□□□□□ -0.25
LINC01049-201ENST00000426840 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
LINC01049-201ENST00000426840 ATF5Q9Y2D1 282 aaPredicted RBP13.4□□□□□ -0.26
LINC01049-201ENST00000426840 TOP2AP11388 1531 aaKnown RBP13.37□□□□□ -0.27
LINC01049-201ENST00000426840 SUPT5HO00267 1087 aaKnown RBP13.36□□□□□ -0.27
LINC01049-201ENST00000426840 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
LINC01049-201ENST00000426840 ABCB7O75027 752 aa13.31□□□□□ -0.28
LINC01049-201ENST00000426840 DSG3P32926 999 aa13.29□□□□□ -0.28
LINC01049-201ENST00000426840 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
LINC01049-201ENST00000426840 CCDC88BA6NC98 1476 aa13.26□□□□□ -0.29
LINC01049-201ENST00000426840 NESP48681 1621 aa13.24□□□□□ -0.29
LINC01049-201ENST00000426840 CADPSQ9ULU8 1353 aa13.22□□□□□ -0.29
LINC01049-201ENST00000426840 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
LINC01049-201ENST00000426840 POLA2Q14181 598 aa13.17□□□□□ -0.3
LINC01049-201ENST00000426840 CFTRP13569 1480 aa13.16□□□□□ -0.3
LINC01049-201ENST00000426840 PDS5BQ9NTI5 1447 aa13.12□□□□□ -0.31
LINC01049-201ENST00000426840 ERCC6Q03468 1493 aa13.09□□□□□ -0.31
LINC01049-201ENST00000426840 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
LINC01049-201ENST00000426840 KIF21AQ7Z4S6 1674 aa13.04□□□□□ -0.32
LINC01049-201ENST00000426840 PRDM2Q13029 1718 aa12.99□□□□□ -0.33
LINC01049-201ENST00000426840 CEP164Q9UPV0 1460 aa12.99□□□□□ -0.33
LINC01049-201ENST00000426840 THOC2Q8NI27 1593 aaKnown RBP12.96□□□□□ -0.33
LINC01049-201ENST00000426840 MRC2Q9UBG0 1479 aa12.96□□□□□ -0.34
LINC01049-201ENST00000426840 URB2Q14146 1524 aaKnown RBP12.92□□□□□ -0.34
LINC01049-201ENST00000426840 CUX2O14529 1486 aa12.91□□□□□ -0.34
LINC01049-201ENST00000426840 WDR62O43379 1518 aa12.9□□□□□ -0.34
LINC01049-201ENST00000426840 TOPBP1Q92547 1522 aa12.86□□□□□ -0.35
LINC01049-201ENST00000426840 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
LINC01049-201ENST00000426840 ZBTB12Q9Y330 459 aaPredicted RBP12.85□□□□□ -0.35
LINC01049-201ENST00000426840 DNMBPQ6XZF7 1577 aa12.82□□□□□ -0.36
LINC01049-201ENST00000426840 CUX1P39880 1505 aa12.81□□□□□ -0.36
LINC01049-201ENST00000426840 FBLN2P98095 1184 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms