RNA–Protein interactions for RNA: ENST00000321110.1

RTL3-201, Transcript of retrotransposon Gag like 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RTL3, Length 2,648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3-201ENST00000321110 NISCHQ9Y2I1 1504 aa14.88□□□□□ -0.03
RTL3-201ENST00000321110 HRCP23327 699 aa13.62□□□□□ -0.23
RTL3-201ENST00000321110 PELP1Q8IZL8 1130 aaKnown RBP13.37□□□□□ -0.27
RTL3-201ENST00000321110 PPARGC1BQ86YN6 1023 aaKnown RBP13.35□□□□□ -0.27
RTL3-201ENST00000321110 PCGF6Q9BYE7 350 aa13.22□□□□□ -0.29
RTL3-201ENST00000321110 MYO15BQ96JP2 1530 aa13.1□□□□□ -0.31
RTL3-201ENST00000321110 SUPT5HO00267 1087 aaKnown RBP13.03□□□□□ -0.32
RTL3-201ENST00000321110 SHROOM4Q9ULL8 1493 aa13.02□□□□□ -0.33
RTL3-201ENST00000321110 SCAF1Q9H7N4 1312 aaKnown RBP13.01□□□□□ -0.33
RTL3-201ENST00000321110 MYT1Q01538 1121 aa13□□□□□ -0.33
RTL3-201ENST00000321110 CHIC1Q5VXU3 224 aa12.93□□□□□ -0.34
RTL3-201ENST00000321110 DCAF1Q9Y4B6 1507 aa12.84□□□□□ -0.35
RTL3-201ENST00000321110 TRIM26Q12899 539 aaPredicted RBP12.73□□□□□ -0.37
RTL3-201ENST00000321110 CCDC180Q9P1Z9 1646 aa12.71□□□□□ -0.38
RTL3-201ENST00000321110 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
RTL3-201ENST00000321110 LOC105371045A0A1W2PR82 267 aa12.65□□□□□ -0.38
RTL3-201ENST00000321110 ZCCHC6Q5VYS8 1495 aaKnown RBP12.62□□□□□ -0.39
RTL3-201ENST00000321110 ACIN1Q9UKV3 1341 aaKnown RBP12.6□□□□□ -0.39
RTL3-201ENST00000321110 NEUROD1Q13562 356 aa12.58□□□□□ -0.4
RTL3-201ENST00000321110 GTF3C3Q9Y5Q9 886 aa12.51□□□□□ -0.41
RTL3-201ENST00000321110 CENPBP07199 599 aaPredicted RBP12.36□□□□□ -0.43
RTL3-201ENST00000321110 TTBK1Q5TCY1 1321 aaPredicted RBP12.35□□□□□ -0.43
RTL3-201ENST00000321110 DIEXFQ68CQ4 756 aaKnown RBP12.26□□□□□ -0.45
RTL3-201ENST00000321110 DCAF8L2P0C7V8 631 aa12.23□□□□□ -0.45
RTL3-201ENST00000321110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
RTL3-201ENST00000321110 ABCC9O60706 1549 aa12.17□□□□□ -0.46
RTL3-201ENST00000321110 CCER1Q8TC90 406 aaPredicted RBP12.13□□□□□ -0.47
RTL3-201ENST00000321110 BCL11AQ9H165 835 aa12.11□□□□□ -0.47
RTL3-201ENST00000321110 TRIM41Q8WV44 630 aa12.09□□□□□ -0.47
RTL3-201ENST00000321110 YTHDC1Q96MU7 727 aaKnown RBP12.08□□□□□ -0.48
RTL3-201ENST00000321110 FAM9AQ8IZU1 332 aaPredicted RBP12.05□□□□□ -0.48
RTL3-201ENST00000321110 EHMT2Q96KQ7 1210 aa12.01□□□□□ -0.49
RTL3-201ENST00000321110 ANP32EQ9BTT0 268 aa11.98□□□□□ -0.49
RTL3-201ENST00000321110 ZNF316A6NFI3 1004 aaPredicted RBP11.98□□□□□ -0.49
RTL3-201ENST00000321110 MIER1Q8N108 512 aa11.95□□□□□ -0.5
RTL3-201ENST00000321110 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
RTL3-201ENST00000321110 TSHZ2Q9NRE2 1034 aa11.88□□□□□ -0.51
RTL3-201ENST00000321110 SUPT16HQ9Y5B9 1047 aaKnown RBP11.87□□□□□ -0.51
RTL3-201ENST00000321110 SCRIBQ14160 1630 aa11.84□□□□□ -0.51
RTL3-201ENST00000321110 RSF1Q96T23 1441 aaPredicted RBP11.8□□□□□ -0.52
RTL3-201ENST00000321110 PRKCSHP14314 528 aaPredicted RBP11.8□□□□□ -0.52
RTL3-201ENST00000321110 CLSPNQ9HAW4 1339 aa11.79□□□□□ -0.52
RTL3-201ENST00000321110 RB1CC1Q8TDY2 1594 aa11.76□□□□□ -0.53
RTL3-201ENST00000321110 NACADO15069 1562 aa11.71□□□□□ -0.53
RTL3-201ENST00000321110 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
RTL3-201ENST00000321110 ERICH6Q7L0X2 663 aa11.61□□□□□ -0.55
RTL3-201ENST00000321110 CEP162Q5TB80 1403 aa11.58□□□□□ -0.56
RTL3-201ENST00000321110 CECR2Q9BXF3 1484 aa11.58□□□□□ -0.56
RTL3-201ENST00000321110 BCANQ96GW7 911 aa11.56□□□□□ -0.56
RTL3-201ENST00000321110 RBM19Q9Y4C8 960 aaKnown RBP11.56□□□□□ -0.56
RTL3-201ENST00000321110 MROH2BQ7Z745 1585 aa11.56□□□□□ -0.56
RTL3-201ENST00000321110 HNRNPUL2Q1KMD3 747 aaKnown RBP11.55□□□□□ -0.56
RTL3-201ENST00000321110 WIZO95785 1651 aa11.53□□□□□ -0.56
RTL3-201ENST00000321110 MSH5O43196 834 aa11.52□□□□□ -0.57
RTL3-201ENST00000321110 APLP2Q06481 763 aa11.51□□□□□ -0.57
RTL3-201ENST00000321110 PABPN1Q86U42 306 aaKnown RBP eCLIP11.5□□□□□ -0.57
RTL3-201ENST00000321110 FKBP8Q14318 412 aa11.49□□□□□ -0.57
RTL3-201ENST00000321110 BAZ1AQ9NRL2 1556 aaPredicted RBP11.48□□□□□ -0.57
RTL3-201ENST00000321110 UNC13AQ9UPW8 1703 aa11.48□□□□□ -0.57
RTL3-201ENST00000321110 TNIKQ9UKE5 1360 aa11.48□□□□□ -0.57
RTL3-201ENST00000321110 KCNH8Q96L42 1107 aa11.47□□□□□ -0.57
RTL3-201ENST00000321110 EIF4G1Q04637 1599 aaKnown RBP11.45□□□□□ -0.58
RTL3-201ENST00000321110 ITGAEP38570 1179 aa11.4□□□□□ -0.58
RTL3-201ENST00000321110 CCDC88BA6NC98 1476 aa11.4□□□□□ -0.58
RTL3-201ENST00000321110 ABCC8Q09428 1581 aa11.39□□□□□ -0.59
RTL3-201ENST00000321110 SOGA1O94964 1423 aa11.38□□□□□ -0.59
RTL3-201ENST00000321110 UBTFP17480 764 aaKnown RBP11.37□□□□□ -0.59
RTL3-201ENST00000321110 BICRAQ9NZM4 1560 aa11.36□□□□□ -0.59
RTL3-201ENST00000321110 DHX57Q6P158 1386 aaKnown RBP11.36□□□□□ -0.59
RTL3-201ENST00000321110 FANCIQ9NVI1 1328 aa11.36□□□□□ -0.59
RTL3-201ENST00000321110 ANO8Q9HCE9 1232 aaPredicted RBP11.35□□□□□ -0.59
RTL3-201ENST00000321110 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
RTL3-201ENST00000321110 NEFLP07196 543 aa11.33□□□□□ -0.6
RTL3-201ENST00000321110 DEKP35659 375 aaKnown RBP11.33□□□□□ -0.6
RTL3-201ENST00000321110 SMARCA4P51532 1647 aa11.33□□□□□ -0.6
RTL3-201ENST00000321110 RUSC2Q8N2Y8 1516 aa11.31□□□□□ -0.6
RTL3-201ENST00000321110 SMARCA2P51531 1590 aa11.29□□□□□ -0.6
RTL3-201ENST00000321110 MYT1LQ9UL68 1186 aa11.29□□□□□ -0.6
RTL3-201ENST00000321110 GOLGA3Q08378 1498 aa11.29□□□□□ -0.6
RTL3-201ENST00000321110 EEA1Q15075 1411 aa11.27□□□□□ -0.61
RTL3-201ENST00000321110 CLIP1P30622 1438 aa11.25□□□□□ -0.61
RTL3-201ENST00000321110 TRIM52Q96A61 297 aa11.24□□□□□ -0.61
RTL3-201ENST00000321110 VPS8Q8N3P4 1428 aa11.24□□□□□ -0.61
RTL3-201ENST00000321110 SALL2Q9Y467 1007 aaPredicted RBP11.23□□□□□ -0.61
RTL3-201ENST00000321110 DDX10Q13206 875 aaKnown RBP11.21□□□□□ -0.62
RTL3-201ENST00000321110 CDK11AQ9UQ88 783 aaPredicted RBP11.21□□□□□ -0.62
RTL3-201ENST00000321110 ERICH6BQ5W0A0 696 aa11.16□□□□□ -0.62
RTL3-201ENST00000321110 PPP1R15AO75807 674 aaPredicted RBP11.15□□□□□ -0.62
RTL3-201ENST00000321110 IRX6P78412 446 aaPredicted RBP11.15□□□□□ -0.62
RTL3-201ENST00000321110 CCDC136Q96JN2 1154 aa11.15□□□□□ -0.62
RTL3-201ENST00000321110 CEP164Q9UPV0 1460 aa11.14□□□□□ -0.63
RTL3-201ENST00000321110 CCER2I3L3R5 266 aa11.14□□□□□ -0.63
RTL3-201ENST00000321110 NBR1Q14596 966 aa11.14□□□□□ -0.63
RTL3-201ENST00000321110 KIF21BO75037 1637 aa11.11□□□□□ -0.63
RTL3-201ENST00000321110 CUX2O14529 1486 aa11.11□□□□□ -0.63
RTL3-201ENST00000321110 PAK3O75914 559 aaPredicted RBP11.11□□□□□ -0.63
RTL3-201ENST00000321110 PEG3Q9GZU2 1588 aa11.1□□□□□ -0.63
RTL3-201ENST00000321110 NOP58Q9Y2X3 529 aaKnown RBP11.1□□□□□ -0.63
RTL3-201ENST00000321110 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
RTL3-201ENST00000321110 MAPKBP1O60336 1514 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms