Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 CRYGFP-201ENST00000418459 633 ntBASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.58■□□□□ 0.89
LIMD1Q9UGP4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMD1Q9UGP4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMD1Q9UGP4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIMD1Q9UGP4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIMD1Q9UGP4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIMD1Q9UGP4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 AC128688.1-201ENST00000487626 519 ntBASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 AC097488.1-201ENST00000507834 756 ntBASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 AC022616.7-201ENST00000525383 220 ntBASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 AP005242.2-201ENST00000580065 1175 ntBASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMD1Q9UGP4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 INGX-201ENST00000359239 846 ntBASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 AC063952.2-201ENST00000498792 1227 ntBASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 LINC01238-205ENST00000567549 1107 ntBASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.56■□□□□ 0.88
LIMD1Q9UGP4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 AC011506.1-201ENST00000474329 610 ntBASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.55■□□□□ 0.88
LIMD1Q9UGP4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 PTBP1P-201ENST00000554374 1601 ntBASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 B3GAT3P1-201ENST00000471720 806 ntBASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 AL445675.2-201ENST00000620291 557 ntBASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.54■□□□□ 0.88
LIMD1Q9UGP4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 FAM87A-204ENST00000613235 858 ntBASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms