Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
MMP28Q9H239 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
MMP28Q9H239 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MMP28Q9H239 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
MMP28Q9H239 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 LINC02228-203ENST00000641970 1355 ntBASIC17.33■□□□□ 0.36
MMP28Q9H239 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 AC123595.1-201ENST00000440769 1046 ntBASIC17.33■□□□□ 0.36
MMP28Q9H239 YBX1P1-201ENST00000445822 960 ntBASIC17.33■□□□□ 0.36
MMP28Q9H239 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
MMP28Q9H239 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MMP28Q9H239 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.33■□□□□ 0.36
MMP28Q9H239 AL691432.2-201ENST00000607222 2038 ntBASIC17.33■□□□□ 0.36
MMP28Q9H239 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MMP28Q9H239 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MMP28Q9H239 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 AC079598.2-202ENST00000546624 1451 ntBASIC17.32■□□□□ 0.36
MMP28Q9H239 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MMP28Q9H239 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 LINC01465-201ENST00000408887 1940 ntBASIC17.32■□□□□ 0.36
MMP28Q9H239 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.32■□□□□ 0.36
MMP28Q9H239 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.32■□□□□ 0.36
MMP28Q9H239 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.32■□□□□ 0.36
MMP28Q9H239 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MMP28Q9H239 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.32■□□□□ 0.36
MMP28Q9H239 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
MMP28Q9H239 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
MMP28Q9H239 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
MMP28Q9H239 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.31■□□□□ 0.36
MMP28Q9H239 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.31■□□□□ 0.36
MMP28Q9H239 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
MMP28Q9H239 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.31■□□□□ 0.36
MMP28Q9H239 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MMP28Q9H239 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 NOC2LP1-202ENST00000452600 2235 ntBASIC17.31■□□□□ 0.36
MMP28Q9H239 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MMP28Q9H239 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
MMP28Q9H239 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
MMP28Q9H239 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.3■□□□□ 0.36
MMP28Q9H239 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.3■□□□□ 0.36
MMP28Q9H239 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
MMP28Q9H239 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 AC012313.1-201ENST00000593393 3059 ntBASIC17.3■□□□□ 0.36
MMP28Q9H239 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.3■□□□□ 0.36
MMP28Q9H239 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.3■□□□□ 0.36
MMP28Q9H239 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 AC034268.1-201ENST00000441047 882 ntBASIC17.3■□□□□ 0.36
MMP28Q9H239 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.3■□□□□ 0.36
MMP28Q9H239 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms