Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 LINC01521-201ENST00000504184 1943 ntBASIC18.29■□□□□ 0.52
BEST3Q8N1M1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
BEST3Q8N1M1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 KRT17P2-201ENST00000300992 1314 ntBASIC18.28■□□□□ 0.52
BEST3Q8N1M1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 MIR4785-201ENST00000585005 73 ntBASIC18.28■□□□□ 0.52
BEST3Q8N1M1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 AC004264.1-201ENST00000608354 794 ntBASIC18.28■□□□□ 0.52
BEST3Q8N1M1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BEST3Q8N1M1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.27■□□□□ 0.52
BEST3Q8N1M1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 AF186192.3-201ENST00000583427 947 ntBASIC18.27■□□□□ 0.52
BEST3Q8N1M1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BEST3Q8N1M1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
BEST3Q8N1M1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.27■□□□□ 0.51
BEST3Q8N1M1 AL157384.1-201ENST00000445995 2473 ntBASIC18.27■□□□□ 0.51
BEST3Q8N1M1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
BEST3Q8N1M1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
BEST3Q8N1M1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
BEST3Q8N1M1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 KRT16P6-202ENST00000425692 1426 ntBASIC18.26■□□□□ 0.51
BEST3Q8N1M1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 AC073912.3-201ENST00000624414 853 ntBASIC18.26■□□□□ 0.51
BEST3Q8N1M1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
BEST3Q8N1M1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms