Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.31■■□□□ 1
KRT39Q6A163 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
KRT39Q6A163 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.31■■□□□ 1
KRT39Q6A163 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT39Q6A163 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
KRT39Q6A163 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 POM121L13P-201ENST00000422362 380 ntBASIC21.3■■□□□ 1
KRT39Q6A163 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.3■■□□□ 1
KRT39Q6A163 AP003097.1-201ENST00000530657 1135 ntBASIC21.3■■□□□ 1
KRT39Q6A163 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT39Q6A163 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.3■■□□□ 1
KRT39Q6A163 AL121829.2-201ENST00000620908 328 ntBASIC21.3■■□□□ 1
KRT39Q6A163 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
KRT39Q6A163 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.3■■□□□ 1
KRT39Q6A163 TREX1-205ENST00000625293 1783 ntBASIC21.3■■□□□ 1
KRT39Q6A163 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.3■■□□□ 1
KRT39Q6A163 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
KRT39Q6A163 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.3■■□□□ 1
KRT39Q6A163 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.29■■□□□ 1
KRT39Q6A163 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.29■■□□□ 1
KRT39Q6A163 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.29■■□□□ 1
KRT39Q6A163 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.29■■□□□ 1
KRT39Q6A163 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.29■■□□□ 1
KRT39Q6A163 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
KRT39Q6A163 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.29■■□□□ 1
KRT39Q6A163 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.29■■□□□ 1
KRT39Q6A163 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.29■■□□□ 1
KRT39Q6A163 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.29■■□□□ 1
KRT39Q6A163 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 AL158211.5-201ENST00000623583 2518 ntBASIC21.29■■□□□ 1
KRT39Q6A163 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.29■■□□□ 1
KRT39Q6A163 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.29■■□□□ 1
KRT39Q6A163 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT39Q6A163 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
KRT39Q6A163 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
KRT39Q6A163 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.28■■□□□ 1
KRT39Q6A163 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.28■■□□□ 1
KRT39Q6A163 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.28■■□□□ 1
KRT39Q6A163 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.28■■□□□ 1
KRT39Q6A163 AC026366.1-201ENST00000488803 879 ntBASIC21.28■■□□□ 1
KRT39Q6A163 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.28■■□□□ 1
KRT39Q6A163 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.28■■□□□ 1
KRT39Q6A163 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.28■■□□□ 1
KRT39Q6A163 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT39Q6A163 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT39Q6A163 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.27■■□□□ 1
KRT39Q6A163 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.27■■□□□ 1
KRT39Q6A163 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
KRT39Q6A163 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT39Q6A163 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.27■■□□□ 1
KRT39Q6A163 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.27■■□□□ 1
KRT39Q6A163 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.27■■□□□ 1
KRT39Q6A163 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
KRT39Q6A163 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.27■■□□□ 1
KRT39Q6A163 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
KRT39Q6A163 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT39Q6A163 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms