Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COL6A2P12110 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A2P12110 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL6A2P12110 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A2P12110 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
COL6A2P12110 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.47■□□□□ 0.71
COL6A2P12110 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.47■□□□□ 0.71
COL6A2P12110 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
COL6A2P12110 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A2P12110 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COL6A2P12110 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A2P12110 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
COL6A2P12110 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.46■□□□□ 0.71
COL6A2P12110 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A2P12110 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.46■□□□□ 0.71
COL6A2P12110 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A2P12110 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A2P12110 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A2P12110 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.7
COL6A2P12110 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A2P12110 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
COL6A2P12110 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL6A2P12110 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL6A2P12110 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A2P12110 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A2P12110 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A2P12110 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
COL6A2P12110 KRT17P1-201ENST00000399211 1546 ntBASIC19.44■□□□□ 0.7
COL6A2P12110 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL6A2P12110 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A2P12110 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A2P12110 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A2P12110 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL6A2P12110 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A2P12110 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms