Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB3O15347 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB3O15347 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB3O15347 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 AL691432.2-201ENST00000607222 2038 ntBASIC15.87■□□□□ 0.13
HMGB3O15347 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB3O15347 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB3O15347 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB3O15347 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.86■□□□□ 0.13
HMGB3O15347 AC136469.2-201ENST00000623944 1028 ntBASIC15.86■□□□□ 0.13
HMGB3O15347 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
HMGB3O15347 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB3O15347 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HMGB3O15347 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.86■□□□□ 0.13
HMGB3O15347 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.86■□□□□ 0.13
HMGB3O15347 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HMGB3O15347 AC009237.3-201ENST00000393279 1427 ntBASIC15.85■□□□□ 0.13
HMGB3O15347 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC15.85■□□□□ 0.13
HMGB3O15347 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
HMGB3O15347 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 AC061975.6-201ENST00000579045 1553 ntBASIC15.85■□□□□ 0.13
HMGB3O15347 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB3O15347 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB3O15347 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.85■□□□□ 0.13
HMGB3O15347 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
HMGB3O15347 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGB3O15347 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HMGB3O15347 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGB3O15347 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HMGB3O15347 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HMGB3O15347 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGB3O15347 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HMGB3O15347 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 FXN-202ENST00000396364 980 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGB3O15347 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGB3O15347 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.84■□□□□ 0.13
HMGB3O15347 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms