Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.33■□□□□ 0.53
BEST3Q8N1M1 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BEST3Q8N1M1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 KRT16P5-201ENST00000455284 522 ntBASIC18.32■□□□□ 0.52
BEST3Q8N1M1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 AC113410.3-201ENST00000623366 203 ntBASIC18.32■□□□□ 0.52
BEST3Q8N1M1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BEST3Q8N1M1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BEST3Q8N1M1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HTR7P1-201ENST00000538670 1336 ntBASIC18.3■□□□□ 0.52
BEST3Q8N1M1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
BEST3Q8N1M1 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms