Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
FOXA1P55317 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.13■□□□□ 0.65
FOXA1P55317 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.13■□□□□ 0.65
FOXA1P55317 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.13■□□□□ 0.65
FOXA1P55317 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.13■□□□□ 0.65
FOXA1P55317 AC005181.1-201ENST00000604782 1256 ntBASIC19.13■□□□□ 0.65
FOXA1P55317 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.13■□□□□ 0.65
FOXA1P55317 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.13■□□□□ 0.65
FOXA1P55317 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.13■□□□□ 0.65
FOXA1P55317 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
FOXA1P55317 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.12■□□□□ 0.65
FOXA1P55317 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.12■□□□□ 0.65
FOXA1P55317 AL512625.2-201ENST00000417533 625 ntBASIC19.12■□□□□ 0.65
FOXA1P55317 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.12■□□□□ 0.65
FOXA1P55317 AC023632.3-201ENST00000521633 145 ntBASIC19.12■□□□□ 0.65
FOXA1P55317 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 MIR5787-201ENST00000611784 55 ntBASIC19.12■□□□□ 0.65
FOXA1P55317 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
FOXA1P55317 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.12■□□□□ 0.65
FOXA1P55317 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
FOXA1P55317 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA1P55317 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
FOXA1P55317 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
FOXA1P55317 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.11■□□□□ 0.65
FOXA1P55317 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.11■□□□□ 0.65
FOXA1P55317 AC092437.1-201ENST00000624794 1048 ntBASIC19.11■□□□□ 0.65
FOXA1P55317 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.11■□□□□ 0.65
FOXA1P55317 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
FOXA1P55317 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA1P55317 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.11■□□□□ 0.65
FOXA1P55317 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.1■□□□□ 0.65
FOXA1P55317 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
FOXA1P55317 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.1■□□□□ 0.65
FOXA1P55317 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.1■□□□□ 0.65
FOXA1P55317 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA1P55317 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA1P55317 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
FOXA1P55317 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.09■□□□□ 0.65
FOXA1P55317 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.09■□□□□ 0.65
FOXA1P55317 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
FOXA1P55317 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.09■□□□□ 0.65
FOXA1P55317 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
FOXA1P55317 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
FOXA1P55317 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
FOXA1P55317 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA1P55317 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms