Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.57■□□□□ 0.88
PTPN9P43378 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PTPN9P43378 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.57■□□□□ 0.88
PTPN9P43378 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.57■□□□□ 0.88
PTPN9P43378 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PTPN9P43378 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.57■□□□□ 0.88
PTPN9P43378 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PTPN9P43378 TREX1-205ENST00000625293 1783 ntBASIC20.57■□□□□ 0.88
PTPN9P43378 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.56■□□□□ 0.88
PTPN9P43378 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.56■□□□□ 0.88
PTPN9P43378 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PTPN9P43378 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.56■□□□□ 0.88
PTPN9P43378 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.56■□□□□ 0.88
PTPN9P43378 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN9P43378 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN9P43378 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.56■□□□□ 0.88
PTPN9P43378 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.55■□□□□ 0.88
PTPN9P43378 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.55■□□□□ 0.88
PTPN9P43378 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
PTPN9P43378 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN9P43378 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN9P43378 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
PTPN9P43378 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PTPN9P43378 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.54■□□□□ 0.88
PTPN9P43378 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PTPN9P43378 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
PTPN9P43378 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.54■□□□□ 0.88
PTPN9P43378 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.54■□□□□ 0.88
PTPN9P43378 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN9P43378 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PTPN9P43378 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
PTPN9P43378 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms