Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
MT-ND1P03886 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MT-ND1P03886 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.6■□□□□ 0.57
MT-ND1P03886 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND1P03886 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MT-ND1P03886 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 AC138932.1-201ENST00000534164 6830 ntBASIC18.59■□□□□ 0.57
MT-ND1P03886 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
MT-ND1P03886 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MT-ND1P03886 AC243732.1-201ENST00000612648 864 ntBASIC18.59■□□□□ 0.57
MT-ND1P03886 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MT-ND1P03886 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.59■□□□□ 0.57
MT-ND1P03886 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND1P03886 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MT-ND1P03886 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.59■□□□□ 0.57
MT-ND1P03886 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND1P03886 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND1P03886 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.58■□□□□ 0.57
MT-ND1P03886 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND1P03886 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
MT-ND1P03886 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.58■□□□□ 0.57
MT-ND1P03886 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND1P03886 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.58■□□□□ 0.56
MT-ND1P03886 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.58■□□□□ 0.56
MT-ND1P03886 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.58■□□□□ 0.56
MT-ND1P03886 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.58■□□□□ 0.56
MT-ND1P03886 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.58■□□□□ 0.56
MT-ND1P03886 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND1P03886 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
MT-ND1P03886 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 KRT19P1-201ENST00000405746 1186 ntBASIC18.57■□□□□ 0.56
MT-ND1P03886 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.57■□□□□ 0.56
MT-ND1P03886 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 FAM21FP-204ENST00000608637 956 ntBASIC18.57■□□□□ 0.56
MT-ND1P03886 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND1P03886 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 RBM17P2-201ENST00000616397 1405 ntBASIC18.57■□□□□ 0.56
MT-ND1P03886 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND1P03886 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND1P03886 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND1P03886 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.56■□□□□ 0.56
MT-ND1P03886 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND1P03886 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND1P03886 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND1P03886 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
MT-ND1P03886 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
MT-ND1P03886 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND1P03886 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.56■□□□□ 0.56
MT-ND1P03886 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.56■□□□□ 0.56
MT-ND1P03886 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms