Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.47■□□□□ 0.71
SNX3O60493 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SNX3O60493 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.47■□□□□ 0.71
SNX3O60493 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SNX3O60493 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.46■□□□□ 0.71
SNX3O60493 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SNX3O60493 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.46■□□□□ 0.71
SNX3O60493 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.46■□□□□ 0.71
SNX3O60493 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
SNX3O60493 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 AC233992.3-201ENST00000607491 485 ntBASIC19.46■□□□□ 0.71
SNX3O60493 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SNX3O60493 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.46■□□□□ 0.71
SNX3O60493 AC068880.1-201ENST00000507289 2297 ntBASIC19.46■□□□□ 0.71
SNX3O60493 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SNX3O60493 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.46■□□□□ 0.71
SNX3O60493 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNX3O60493 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SNX3O60493 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 FZD10-202ENST00000539839 3282 ntBASIC19.45■□□□□ 0.7
SNX3O60493 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.45■□□□□ 0.7
SNX3O60493 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.45■□□□□ 0.7
SNX3O60493 AC126544.1-201ENST00000580842 1059 ntBASIC19.45■□□□□ 0.7
SNX3O60493 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.45■□□□□ 0.7
SNX3O60493 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNX3O60493 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.45■□□□□ 0.7
SNX3O60493 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SNX3O60493 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.44■□□□□ 0.7
SNX3O60493 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SNX3O60493 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SNX3O60493 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 AC020763.4-201ENST00000623414 4170 ntBASIC19.44■□□□□ 0.7
SNX3O60493 AL031598.1-201ENST00000561511 1773 ntBASIC19.44■□□□□ 0.7
SNX3O60493 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.44■□□□□ 0.7
SNX3O60493 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNX3O60493 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SNX3O60493 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.43■□□□□ 0.7
SNX3O60493 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SNX3O60493 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SNX3O60493 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
SNX3O60493 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.43■□□□□ 0.7
SNX3O60493 FAM21FP-204ENST00000608637 956 ntBASIC19.43■□□□□ 0.7
SNX3O60493 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SNX3O60493 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.43■□□□□ 0.7
SNX3O60493 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SNX3O60493 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.43■□□□□ 0.7
SNX3O60493 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SNX3O60493 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SNX3O60493 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.43■□□□□ 0.7
SNX3O60493 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SNX3O60493 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms