Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
EXOSC1Q9Y3B2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
EXOSC1Q9Y3B2 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
EXOSC1Q9Y3B2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AP001271.2-201ENST00000624018 1556 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AC096631.2-201ENST00000436136 790 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 HCG11-201ENST00000411553 5696 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 NEFHP1-201ENST00000412845 2629 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 KRT16P6-202ENST00000425692 1426 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 AC087633.2-202ENST00000565166 1439 ntBASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.7■□□□□ 0.42
EXOSC1Q9Y3B2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 SLC7A5P1-201ENST00000568957 537 ntBASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 MIR6084-201ENST00000622012 110 ntBASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.69■□□□□ 0.42
EXOSC1Q9Y3B2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EXOSC1Q9Y3B2 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 KRT8P17-201ENST00000453110 1448 ntBASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
EXOSC1Q9Y3B2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms