Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 JTB-203ENST00000368589 1216 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 AC004854.2-201ENST00000608450 1441 ntBASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 RBM17P2-201ENST00000616397 1405 ntBASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 AC091799.1-201ENST00000422823 811 ntBASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 KRT18P14-201ENST00000534205 1250 ntBASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 AC243732.1-201ENST00000612648 864 ntBASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHMP1AQ9HD42 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 KRT8P36-201ENST00000489121 1440 ntBASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.97■□□□□ 0.31
CHMP1AQ9HD42 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHMP1AQ9HD42 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms