Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
SRP54P61011 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.54■□□□□ 0.72
SRP54P61011 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SRP54P61011 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.54■□□□□ 0.72
SRP54P61011 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.54■□□□□ 0.72
SRP54P61011 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SRP54P61011 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRP54P61011 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
SRP54P61011 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.54■□□□□ 0.72
SRP54P61011 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.53■□□□□ 0.72
SRP54P61011 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SRP54P61011 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.53■□□□□ 0.72
SRP54P61011 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.53■□□□□ 0.72
SRP54P61011 AF186192.3-201ENST00000583427 947 ntBASIC19.53■□□□□ 0.72
SRP54P61011 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
SRP54P61011 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRP54P61011 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.52■□□□□ 0.72
SRP54P61011 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SRP54P61011 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SRP54P61011 AL353807.1-201ENST00000427475 662 ntBASIC19.52■□□□□ 0.72
SRP54P61011 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.52■□□□□ 0.72
SRP54P61011 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.52■□□□□ 0.72
SRP54P61011 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.52■□□□□ 0.72
SRP54P61011 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.52■□□□□ 0.72
SRP54P61011 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.52■□□□□ 0.72
SRP54P61011 MIR4785-201ENST00000585005 73 ntBASIC19.52■□□□□ 0.72
SRP54P61011 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.52■□□□□ 0.72
SRP54P61011 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SRP54P61011 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SRP54P61011 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.51■□□□□ 0.71
SRP54P61011 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.51■□□□□ 0.71
SRP54P61011 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.51■□□□□ 0.71
SRP54P61011 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.51■□□□□ 0.71
SRP54P61011 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.51■□□□□ 0.71
SRP54P61011 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.51■□□□□ 0.71
SRP54P61011 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.51■□□□□ 0.71
SRP54P61011 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.51■□□□□ 0.71
SRP54P61011 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.51■□□□□ 0.71
SRP54P61011 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SRP54P61011 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.51■□□□□ 0.71
SRP54P61011 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SRP54P61011 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SRP54P61011 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.51■□□□□ 0.71
SRP54P61011 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRP54P61011 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SRP54P61011 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.5■□□□□ 0.71
SRP54P61011 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SRP54P61011 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SRP54P61011 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.5■□□□□ 0.71
SRP54P61011 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.5■□□□□ 0.71
SRP54P61011 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms