Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A2P12110 AL589743.5-201ENST00000616611 1050 ntBASIC19.56■□□□□ 0.72
COL6A2P12110 AC011767.1-201ENST00000617410 1153 ntBASIC19.56■□□□□ 0.72
COL6A2P12110 AC231657.2-201ENST00000624556 255 ntBASIC19.56■□□□□ 0.72
COL6A2P12110 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.56■□□□□ 0.72
COL6A2P12110 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 AP000974.1-201ENST00000623909 2387 ntBASIC19.56■□□□□ 0.72
COL6A2P12110 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
COL6A2P12110 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL6A2P12110 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A2P12110 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL6A2P12110 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL6A2P12110 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
COL6A2P12110 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 MIR935-201ENST00000401179 91 ntBASIC19.55■□□□□ 0.72
COL6A2P12110 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
COL6A2P12110 CYP2T1P-201ENST00000432607 1285 ntBASIC19.55■□□□□ 0.72
COL6A2P12110 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A2P12110 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A2P12110 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 OR10C1-204ENST00000622521 1039 ntBASIC19.55■□□□□ 0.72
COL6A2P12110 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A2P12110 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A2P12110 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A2P12110 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
COL6A2P12110 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A2P12110 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A2P12110 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.54■□□□□ 0.72
COL6A2P12110 C2orf69P4-201ENST00000565394 541 ntBASIC19.54■□□□□ 0.72
COL6A2P12110 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL6A2P12110 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A2P12110 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL6A2P12110 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A2P12110 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL6A2P12110 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A2P12110 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL6A2P12110 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
COL6A2P12110 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A2P12110 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A2P12110 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A2P12110 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A2P12110 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A2P12110 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL6A2P12110 TNXA-203ENST00000507684 2038 ntBASIC19.52■□□□□ 0.72
COL6A2P12110 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 AC010980.2-201ENST00000587099 1412 ntBASIC19.52■□□□□ 0.72
COL6A2P12110 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A2P12110 AL512625.2-201ENST00000417533 625 ntBASIC19.52■□□□□ 0.72
COL6A2P12110 AL355472.2-201ENST00000422958 438 ntBASIC19.52■□□□□ 0.72
COL6A2P12110 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A2P12110 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A2P12110 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms