Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
USH2AO75445 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
USH2AO75445 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
USH2AO75445 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 TSPY12P-201ENST00000421279 868 ntBASIC8.89□□□□□ -0.99
USH2AO75445 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
USH2AO75445 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
USH2AO75445 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
USH2AO75445 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC8.89□□□□□ -0.99
USH2AO75445 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 AC091304.2-201ENST00000564639 760 ntBASIC8.89□□□□□ -0.99
USH2AO75445 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
USH2AO75445 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC8.89□□□□□ -0.99
USH2AO75445 AL139424.1-201ENST00000607572 797 ntBASIC8.89□□□□□ -0.99
USH2AO75445 AL023973.1-201ENST00000624619 620 ntBASIC8.89□□□□□ -0.99
USH2AO75445 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC8.89□□□□□ -0.99
USH2AO75445 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 AL645929.1-201ENST00000420084 975 ntBASIC8.88□□□□□ -0.99
USH2AO75445 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 AF228730.7-201ENST00000641842 219 ntBASIC8.88□□□□□ -0.99
USH2AO75445 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC8.88□□□□□ -0.99
USH2AO75445 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC8.88□□□□□ -0.99
USH2AO75445 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC8.88□□□□□ -0.99
USH2AO75445 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
USH2AO75445 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
USH2AO75445 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC8.87□□□□□ -0.99
USH2AO75445 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC8.87□□□□□ -0.99
USH2AO75445 AC055717.3-201ENST00000622967 595 ntBASIC8.87□□□□□ -0.99
USH2AO75445 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC8.87□□□□□ -0.99
USH2AO75445 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
USH2AO75445 HLA-A-201ENST00000376802 1334 ntBASIC8.87□□□□□ -0.99
USH2AO75445 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
USH2AO75445 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC8.87□□□□□ -0.99
USH2AO75445 AC112907.2-201ENST00000448639 330 ntBASIC8.87□□□□□ -0.99
USH2AO75445 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
USH2AO75445 AL031432.5-201ENST00000641059 760 ntBASIC8.87□□□□□ -0.99
USH2AO75445 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
USH2AO75445 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
USH2AO75445 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC8.87□□□□□ -0.99
USH2AO75445 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
USH2AO75445 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms