Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 AC093787.1-201ENST00000450396 207 ntBASIC19.23■□□□□ 0.67
UBFD1O14562 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 C2orf69P4-201ENST00000565394 541 ntBASIC19.23■□□□□ 0.67
UBFD1O14562 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.23■□□□□ 0.67
UBFD1O14562 BID-214ENST00000617586 542 ntTSL 5 BASIC19.23■□□□□ 0.67
UBFD1O14562 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
UBFD1O14562 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 AL032819.2-201ENST00000624543 2162 ntBASIC19.23■□□□□ 0.67
UBFD1O14562 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBFD1O14562 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
UBFD1O14562 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 AC004408.2-201ENST00000623613 2777 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 PHGDH-210ENST00000641115 1638 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
UBFD1O14562 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 HLA-G-202ENST00000376815 851 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 HLA-G-203ENST00000376818 1127 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.22■□□□□ 0.67
UBFD1O14562 AC007322.1-201ENST00000426983 750 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.22■□□□□ 0.67
UBFD1O14562 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.22■□□□□ 0.67
UBFD1O14562 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.22■□□□□ 0.67
UBFD1O14562 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.22■□□□□ 0.67
UBFD1O14562 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
UBFD1O14562 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.22■□□□□ 0.67
UBFD1O14562 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.22■□□□□ 0.67
UBFD1O14562 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
UBFD1O14562 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.22■□□□□ 0.67
UBFD1O14562 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBFD1O14562 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.21■□□□□ 0.67
UBFD1O14562 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.21■□□□□ 0.67
UBFD1O14562 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.21■□□□□ 0.67
UBFD1O14562 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.21■□□□□ 0.67
UBFD1O14562 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 OR10C1-204ENST00000622521 1039 ntBASIC19.21■□□□□ 0.67
UBFD1O14562 AC231657.2-201ENST00000624556 255 ntBASIC19.21■□□□□ 0.67
UBFD1O14562 AC008694.1-202ENST00000636953 945 ntBASIC19.21■□□□□ 0.67
UBFD1O14562 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBFD1O14562 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.21■□□□□ 0.67
UBFD1O14562 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
UBFD1O14562 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
UBFD1O14562 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.2■□□□□ 0.66
UBFD1O14562 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.2■□□□□ 0.66
UBFD1O14562 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.2■□□□□ 0.66
UBFD1O14562 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.2■□□□□ 0.66
UBFD1O14562 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBFD1O14562 AC023632.3-201ENST00000521633 145 ntBASIC19.2■□□□□ 0.66
UBFD1O14562 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
UBFD1O14562 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.2■□□□□ 0.66
UBFD1O14562 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.19■□□□□ 0.66
UBFD1O14562 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
UBFD1O14562 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
UBFD1O14562 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
UBFD1O14562 AL162430.1-201ENST00000480705 870 ntBASIC19.19■□□□□ 0.66
UBFD1O14562 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.19■□□□□ 0.66
UBFD1O14562 AL589743.5-201ENST00000616611 1050 ntBASIC19.19■□□□□ 0.66
UBFD1O14562 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.19■□□□□ 0.66
UBFD1O14562 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.19■□□□□ 0.66
UBFD1O14562 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms