Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CUX1P39880 CLCA3P-203ENST00000490028 2781 ntBASIC10.5□□□□□ -0.73
CUX1P39880 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CUX1P39880 GAPDHP23-201ENST00000444823 993 ntBASIC10.49□□□□□ -0.73
CUX1P39880 RN7SL799P-201ENST00000475891 298 ntBASIC10.49□□□□□ -0.73
CUX1P39880 AC112191.2-201ENST00000522428 333 ntBASIC10.49□□□□□ -0.73
CUX1P39880 BICD1-206ENST00000551086 423 ntTSL 3 BASIC10.49□□□□□ -0.73
CUX1P39880 AL512428.1-201ENST00000562221 654 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
CUX1P39880 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC10.49□□□□□ -0.73
CUX1P39880 AC005332.9-201ENST00000620266 2921 ntBASIC10.49□□□□□ -0.73
CUX1P39880 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC10.49□□□□□ -0.73
CUX1P39880 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC10.49□□□□□ -0.73
CUX1P39880 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
CUX1P39880 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
CUX1P39880 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
CUX1P39880 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC10.49□□□□□ -0.73
CUX1P39880 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
CUX1P39880 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
CUX1P39880 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
CUX1P39880 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC10.49□□□□□ -0.73
CUX1P39880 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CUX1P39880 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC10.48□□□□□ -0.73
CUX1P39880 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 SNORA43.1-201ENST00000364863 140 ntBASIC10.48□□□□□ -0.73
CUX1P39880 RNA5SP156-201ENST00000410250 110 ntBASIC10.48□□□□□ -0.73
CUX1P39880 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 RPS7P8-201ENST00000418311 581 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AL035660.1-201ENST00000422041 222 ntBASIC10.48□□□□□ -0.73
CUX1P39880 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC10.48□□□□□ -0.73
CUX1P39880 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC10.48□□□□□ -0.73
CUX1P39880 RANP2-201ENST00000456833 229 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AL136038.1-201ENST00000497246 351 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AC106800.3-201ENST00000511389 308 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AC009120.3-201ENST00000563335 499 ntBASIC10.48□□□□□ -0.73
CUX1P39880 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 AL357562.1-201ENST00000624911 609 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AC079776.5-201ENST00000641920 211 ntBASIC10.48□□□□□ -0.73
CUX1P39880 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC10.48□□□□□ -0.73
CUX1P39880 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 Z93929.1-201ENST00000418200 1475 ntBASIC10.48□□□□□ -0.73
CUX1P39880 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
CUX1P39880 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 OR2M1P-201ENST00000318104 951 ntBASIC10.48□□□□□ -0.73
CUX1P39880 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC10.48□□□□□ -0.73
CUX1P39880 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
CUX1P39880 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
CUX1P39880 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 AC127526.2-201ENST00000426436 775 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AL121776.1-201ENST00000429337 372 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AL445466.1-201ENST00000448432 357 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AC092824.1-201ENST00000483524 576 ntBASIC10.48□□□□□ -0.73
CUX1P39880 SETP21-201ENST00000514799 892 ntBASIC10.48□□□□□ -0.73
CUX1P39880 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC10.48□□□□□ -0.73
CUX1P39880 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 MYL6-213ENST00000549017 502 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 AC079600.1-201ENST00000550326 297 ntBASIC10.48□□□□□ -0.73
CUX1P39880 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX1P39880 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC10.48□□□□□ -0.73
CUX1P39880 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC10.48□□□□□ -0.73
CUX1P39880 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX1P39880 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CUX1P39880 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX1P39880 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 SPATA31B1P-201ENST00000434692 4016 ntBASIC10.47□□□□□ -0.73
CUX1P39880 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 CD46-209ENST00000367047 3089 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
CUX1P39880 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
CUX1P39880 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 AL513325.1-201ENST00000417716 1034 ntBASIC10.47□□□□□ -0.73
CUX1P39880 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 RPL36AP39-201ENST00000445859 318 ntBASIC10.47□□□□□ -0.73
CUX1P39880 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX1P39880 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX1P39880 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
CUX1P39880 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX1P39880 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC10.46□□□□□ -0.73
CUX1P39880 CREM-208ENST00000361599 2170 ntTSL 5 BASIC10.46□□□□□ -0.73
CUX1P39880 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC10.46□□□□□ -0.73
CUX1P39880 FGG-205ENST00000407946 1636 ntTSL 5 BASIC10.46□□□□□ -0.73
CUX1P39880 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
CUX1P39880 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
CUX1P39880 AC123769.1-201ENST00000530992 3192 ntBASIC10.46□□□□□ -0.73
CUX1P39880 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms