RNA–Protein interactions for RNA: ENST00000505450.5

PROM1-206, Transcript of prominin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PROM1, Length 4,349 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-206ENST00000505450 NISCHQ9Y2I1 1504 aa14.44□□□□□ -0.1
PROM1-206ENST00000505450 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
PROM1-206ENST00000505450 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
PROM1-206ENST00000505450 SHROOM4Q9ULL8 1493 aa13.5□□□□□ -0.25
PROM1-206ENST00000505450 PCGF6Q9BYE7 350 aa13.18□□□□□ -0.3
PROM1-206ENST00000505450 ABCC9O60706 1549 aa13.05□□□□□ -0.32
PROM1-206ENST00000505450 HRCP23327 699 aa13.04□□□□□ -0.32
PROM1-206ENST00000505450 PPARGC1BQ86YN6 1023 aaKnown RBP12.96□□□□□ -0.33
PROM1-206ENST00000505450 CHIC1Q5VXU3 224 aa12.82□□□□□ -0.36
PROM1-206ENST00000505450 EHMT2Q96KQ7 1210 aa12.82□□□□□ -0.36
PROM1-206ENST00000505450 PABPN1Q86U42 306 aaKnown RBP eCLIP12.77□□□□□ -0.37
PROM1-206ENST00000505450 LOC105371045A0A1W2PR82 267 aa12.74□□□□□ -0.37
PROM1-206ENST00000505450 FAM9AQ8IZU1 332 aaPredicted RBP12.66□□□□□ -0.38
PROM1-206ENST00000505450 TRIM26Q12899 539 aaPredicted RBP12.57□□□□□ -0.4
PROM1-206ENST00000505450 PELP1Q8IZL8 1130 aaKnown RBP12.53□□□□□ -0.4
PROM1-206ENST00000505450 MYO15BQ96JP2 1530 aa12.51□□□□□ -0.41
PROM1-206ENST00000505450 ZEB1P37275 1124 aaPredicted RBP12.49□□□□□ -0.41
PROM1-206ENST00000505450 TTBK1Q5TCY1 1321 aaPredicted RBP12.44□□□□□ -0.42
PROM1-206ENST00000505450 TRIM41Q8WV44 630 aa12.43□□□□□ -0.42
PROM1-206ENST00000505450 CCER1Q8TC90 406 aaPredicted RBP12.36□□□□□ -0.43
PROM1-206ENST00000505450 CENPBP07199 599 aaPredicted RBP12.28□□□□□ -0.44
PROM1-206ENST00000505450 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
PROM1-206ENST00000505450 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.24□□□□□ -0.45
PROM1-206ENST00000505450 YTHDC1Q96MU7 727 aaKnown RBP12.23□□□□□ -0.45
PROM1-206ENST00000505450 DCAF1Q9Y4B6 1507 aa12.22□□□□□ -0.45
PROM1-206ENST00000505450 ZCCHC6Q5VYS8 1495 aaKnown RBP12.15□□□□□ -0.46
PROM1-206ENST00000505450 GTF3C3Q9Y5Q9 886 aa12.15□□□□□ -0.47
PROM1-206ENST00000505450 DIEXFQ68CQ4 756 aaKnown RBP12.12□□□□□ -0.47
PROM1-206ENST00000505450 ACIN1Q9UKV3 1341 aaKnown RBP12.1□□□□□ -0.47
PROM1-206ENST00000505450 NEUROD1Q13562 356 aa12.07□□□□□ -0.48
PROM1-206ENST00000505450 MYT1Q01538 1121 aa12.03□□□□□ -0.48
PROM1-206ENST00000505450 RANGAP1P46060 587 aaPredicted RBP12□□□□□ -0.49
PROM1-206ENST00000505450 UBTFP17480 764 aaKnown RBP11.98□□□□□ -0.49
PROM1-206ENST00000505450 FBLN2P98095 1184 aa11.97□□□□□ -0.49
PROM1-206ENST00000505450 CCDC180Q9P1Z9 1646 aa11.93□□□□□ -0.5
PROM1-206ENST00000505450 APLP2Q06481 763 aa11.92□□□□□ -0.5
PROM1-206ENST00000505450 HNRNPUL2Q1KMD3 747 aaKnown RBP11.92□□□□□ -0.5
PROM1-206ENST00000505450 ATP1B4Q9UN42 357 aaPredicted RBP11.84□□□□□ -0.51
PROM1-206ENST00000505450 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.52
PROM1-206ENST00000505450 SCRIBQ14160 1630 aa11.81□□□□□ -0.52
PROM1-206ENST00000505450 RB1CC1Q8TDY2 1594 aa11.79□□□□□ -0.52
PROM1-206ENST00000505450 MIER1Q8N108 512 aa11.73□□□□□ -0.53
PROM1-206ENST00000505450 RSF1Q96T23 1441 aaPredicted RBP11.71□□□□□ -0.53
PROM1-206ENST00000505450 DNAJC5BQ9UF47 199 aa11.68□□□□□ -0.54
PROM1-206ENST00000505450 MYT1LQ9UL68 1186 aa11.68□□□□□ -0.54
PROM1-206ENST00000505450 ITGAEP38570 1179 aa11.65□□□□□ -0.54
PROM1-206ENST00000505450 BCANQ96GW7 911 aa11.64□□□□□ -0.55
PROM1-206ENST00000505450 ERCC6Q03468 1493 aa11.63□□□□□ -0.55
PROM1-206ENST00000505450 TRHP20396 242 aaPredicted RBP11.6□□□□□ -0.55
PROM1-206ENST00000505450 CSRNP3Q8WYN3 585 aa11.59□□□□□ -0.55
PROM1-206ENST00000505450 NEFLP07196 543 aa11.57□□□□□ -0.56
PROM1-206ENST00000505450 NACADO15069 1562 aa11.53□□□□□ -0.56
PROM1-206ENST00000505450 ERICH6Q7L0X2 663 aa11.52□□□□□ -0.57
PROM1-206ENST00000505450 CECR2Q9BXF3 1484 aa11.5□□□□□ -0.57
PROM1-206ENST00000505450 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
PROM1-206ENST00000505450 PLPPR3Q6T4P5 718 aa11.48□□□□□ -0.57
PROM1-206ENST00000505450 ARID3CA6NKF2 412 aa11.42□□□□□ -0.58
PROM1-206ENST00000505450 FKBP8Q14318 412 aa11.42□□□□□ -0.58
PROM1-206ENST00000505450 NPM1P06748 294 aaKnown RBP eCLIP11.42□□□□□ -0.58
PROM1-206ENST00000505450 SUPT16HQ9Y5B9 1047 aaKnown RBP11.42□□□□□ -0.58
PROM1-206ENST00000505450 CHMP7Q8WUX9 453 aaPredicted RBP11.4□□□□□ -0.58
PROM1-206ENST00000505450 SOGA1O94964 1423 aa11.38□□□□□ -0.59
PROM1-206ENST00000505450 TNIKQ9UKE5 1360 aa11.36□□□□□ -0.59
PROM1-206ENST00000505450 DDX10Q13206 875 aaKnown RBP11.36□□□□□ -0.59
PROM1-206ENST00000505450 ANP32EQ9BTT0 268 aa11.35□□□□□ -0.59
PROM1-206ENST00000505450 MROH2BQ7Z745 1585 aa11.34□□□□□ -0.59
PROM1-206ENST00000505450 CCDC88BA6NC98 1476 aa11.33□□□□□ -0.6
PROM1-206ENST00000505450 TRIM52Q96A61 297 aa11.33□□□□□ -0.6
PROM1-206ENST00000505450 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
PROM1-206ENST00000505450 HIRIP3Q9BW71 556 aaPredicted RBP11.32□□□□□ -0.6
PROM1-206ENST00000505450 FAM50AQ14320 339 aaKnown RBP11.32□□□□□ -0.6
PROM1-206ENST00000505450 ABCC8Q09428 1581 aa11.31□□□□□ -0.6
PROM1-206ENST00000505450 CLIP1P30622 1438 aa11.31□□□□□ -0.6
PROM1-206ENST00000505450 TSHZ2Q9NRE2 1034 aa11.3□□□□□ -0.6
PROM1-206ENST00000505450 CNGB1Q14028 1251 aaPredicted RBP11.3□□□□□ -0.6
PROM1-206ENST00000505450 ANP32CO43423 234 aa11.27□□□□□ -0.61
PROM1-206ENST00000505450 BAZ1BQ9UIG0 1483 aaKnown RBP11.26□□□□□ -0.61
PROM1-206ENST00000505450 P3H3Q8IVL6 736 aa11.26□□□□□ -0.61
PROM1-206ENST00000505450 GOLGA3Q08378 1498 aa11.26□□□□□ -0.61
PROM1-206ENST00000505450 AEBP2Q6ZN18 517 aaPredicted RBP11.26□□□□□ -0.61
PROM1-206ENST00000505450 CYB5RLQ6IPT4 315 aa11.25□□□□□ -0.61
PROM1-206ENST00000505450 KCNH8Q96L42 1107 aa11.25□□□□□ -0.61
PROM1-206ENST00000505450 WIZO95785 1651 aa11.25□□□□□ -0.61
PROM1-206ENST00000505450 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
PROM1-206ENST00000505450 IRX6P78412 446 aaPredicted RBP11.23□□□□□ -0.61
PROM1-206ENST00000505450 RUSC2Q8N2Y8 1516 aa11.23□□□□□ -0.61
PROM1-206ENST00000505450 WRNQ14191 1432 aaPredicted RBP eCLIP11.23□□□□□ -0.61
PROM1-206ENST00000505450 CDK11AQ9UQ88 783 aaPredicted RBP11.21□□□□□ -0.61
PROM1-206ENST00000505450 EEA1Q15075 1411 aa11.2□□□□□ -0.62
PROM1-206ENST00000505450 POLR3GLQ9BT43 218 aa11.17□□□□□ -0.62
PROM1-206ENST00000505450 HNRNPUQ00839 825 aaKnown RBP eCLIP11.17□□□□□ -0.62
PROM1-206ENST00000505450 SIN3AQ96ST3 1273 aa11.16□□□□□ -0.62
PROM1-206ENST00000505450 KANK4Q5T7N3 995 aaPredicted RBP11.16□□□□□ -0.62
PROM1-206ENST00000505450 RBM19Q9Y4C8 960 aaKnown RBP11.16□□□□□ -0.62
PROM1-206ENST00000505450 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
PROM1-206ENST00000505450 CEP164Q9UPV0 1460 aa11.13□□□□□ -0.63
PROM1-206ENST00000505450 ESF1Q9H501 851 aaKnown RBP11.12□□□□□ -0.63
PROM1-206ENST00000505450 VPS8Q8N3P4 1428 aa11.12□□□□□ -0.63
PROM1-206ENST00000505450 PDS5BQ9NTI5 1447 aa11.11□□□□□ -0.63
PROM1-206ENST00000505450 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms