RNA–Protein interactions for RNA: ENST00000535043.1

GABRA3-204, Transcript of gamma-aminobutyric acid type A receptor alpha3 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRA3, Length 1,697 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRA3-204ENST00000535043 CHIC1Q5VXU3 224 aa16.97■□□□□ 0.31
GABRA3-204ENST00000535043 AEBP2Q6ZN18 517 aaPredicted RBP16.96■□□□□ 0.31
GABRA3-204ENST00000535043 PHF23Q9BUL5 403 aaPredicted RBP15.08■□□□□ 0
GABRA3-204ENST00000535043 NISCHQ9Y2I1 1504 aa14.51□□□□□ -0.09
GABRA3-204ENST00000535043 SENP3Q9H4L4 574 aaPredicted RBP14.13□□□□□ -0.15
GABRA3-204ENST00000535043 PLPPR3Q6T4P5 718 aa13.93□□□□□ -0.18
GABRA3-204ENST00000535043 ADRA2BP18089 450 aa13.19□□□□□ -0.3
GABRA3-204ENST00000535043 FOXD1Q16676 465 aa13.16□□□□□ -0.3
GABRA3-204ENST00000535043 PPP6R1Q9UPN7 881 aa13.13□□□□□ -0.31
GABRA3-204ENST00000535043 CCDC180Q9P1Z9 1646 aa12.88□□□□□ -0.35
GABRA3-204ENST00000535043 KCNA4P22459 653 aa12.77□□□□□ -0.37
GABRA3-204ENST00000535043 PIAS4Q8N2W9 510 aaPredicted RBP12.45□□□□□ -0.42
GABRA3-204ENST00000535043 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
GABRA3-204ENST00000535043 ABCC9O60706 1549 aa12.43□□□□□ -0.42
GABRA3-204ENST00000535043 PPP4R3CPQ6ZMV5 832 aa12.4□□□□□ -0.42
GABRA3-204ENST00000535043 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
GABRA3-204ENST00000535043 CSRNP3Q8WYN3 585 aa12.13□□□□□ -0.47
GABRA3-204ENST00000535043 ZCCHC6Q5VYS8 1495 aaKnown RBP12.11□□□□□ -0.47
GABRA3-204ENST00000535043 NCBP3Q53F19 620 aaKnown RBP12.1□□□□□ -0.47
GABRA3-204ENST00000535043 NACADO15069 1562 aa12.08□□□□□ -0.48
GABRA3-204ENST00000535043 NPM3O75607 178 aaKnown RBP12.08□□□□□ -0.48
GABRA3-204ENST00000535043 MYO15BQ96JP2 1530 aa12.08□□□□□ -0.48
GABRA3-204ENST00000535043 RB1CC1Q8TDY2 1594 aa12.06□□□□□ -0.48
GABRA3-204ENST00000535043 DCAF1Q9Y4B6 1507 aa12.05□□□□□ -0.48
GABRA3-204ENST00000535043 DCAF8L2P0C7V8 631 aa12.04□□□□□ -0.48
GABRA3-204ENST00000535043 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
GABRA3-204ENST00000535043 ZBTB22O15209 634 aa11.83□□□□□ -0.52
GABRA3-204ENST00000535043 MSH5O43196 834 aa11.79□□□□□ -0.52
GABRA3-204ENST00000535043 SCAF1Q9H7N4 1312 aaKnown RBP11.78□□□□□ -0.52
GABRA3-204ENST00000535043 UNC13AQ9UPW8 1703 aa11.78□□□□□ -0.52
GABRA3-204ENST00000535043 MAPK8IP2Q13387 824 aaPredicted RBP11.76□□□□□ -0.53
GABRA3-204ENST00000535043 SCRIBQ14160 1630 aa11.69□□□□□ -0.54
GABRA3-204ENST00000535043 BICRAQ9NZM4 1560 aa11.67□□□□□ -0.54
GABRA3-204ENST00000535043 DNAJC5BQ9UF47 199 aa11.64□□□□□ -0.55
GABRA3-204ENST00000535043 PABPN1Q86U42 306 aaKnown RBP eCLIP11.63□□□□□ -0.55
GABRA3-204ENST00000535043 SHROOM4Q9ULL8 1493 aa11.61□□□□□ -0.55
GABRA3-204ENST00000535043 RNF216Q9NWF9 866 aaPredicted RBP11.54□□□□□ -0.56
GABRA3-204ENST00000535043 FOXD4L1Q9NU39 408 aa11.52□□□□□ -0.57
GABRA3-204ENST00000535043 DMRT2Q9Y5R5 561 aa11.42□□□□□ -0.58
GABRA3-204ENST00000535043 HOXD11P31277 338 aaPredicted RBP11.4□□□□□ -0.58
GABRA3-204ENST00000535043 EIF4G1Q04637 1599 aaKnown RBP11.36□□□□□ -0.59
GABRA3-204ENST00000535043 SLC4A2P04920 1241 aa11.33□□□□□ -0.6
GABRA3-204ENST00000535043 CC2D2AQ9P2K1 1620 aa11.28□□□□□ -0.6
GABRA3-204ENST00000535043 CECR2Q9BXF3 1484 aa11.26□□□□□ -0.61
GABRA3-204ENST00000535043 BAZ1AQ9NRL2 1556 aaPredicted RBP11.25□□□□□ -0.61
GABRA3-204ENST00000535043 SMARCA4P51532 1647 aa11.23□□□□□ -0.61
GABRA3-204ENST00000535043 MROH2BQ7Z745 1585 aa11.17□□□□□ -0.62
GABRA3-204ENST00000535043 SMARCA2P51531 1590 aa11.15□□□□□ -0.62
GABRA3-204ENST00000535043 NCAPD3P42695 1498 aa11.15□□□□□ -0.62
GABRA3-204ENST00000535043 PEG3Q9GZU2 1588 aa11.15□□□□□ -0.62
GABRA3-204ENST00000535043 ATAD2BQ9ULI0 1458 aa11.15□□□□□ -0.63
GABRA3-204ENST00000535043 HMGXB3Q12766 1538 aa11.09□□□□□ -0.63
GABRA3-204ENST00000535043 RSF1Q96T23 1441 aaPredicted RBP11.09□□□□□ -0.63
GABRA3-204ENST00000535043 MYCNP04198 464 aaPredicted RBP11.07□□□□□ -0.64
GABRA3-204ENST00000535043 BAZ1BQ9UIG0 1483 aaKnown RBP11.05□□□□□ -0.64
GABRA3-204ENST00000535043 WIZO95785 1651 aa11.04□□□□□ -0.64
GABRA3-204ENST00000535043 ATXN8OSP0DMR3 200 aa11.03□□□□□ -0.64
GABRA3-204ENST00000535043 TOP2AP11388 1531 aaKnown RBP10.95□□□□□ -0.66
GABRA3-204ENST00000535043 ATF5Q9Y2D1 282 aaPredicted RBP10.89□□□□□ -0.67
GABRA3-204ENST00000535043 RTN4Q9NQC3 1192 aaKnown RBP10.87□□□□□ -0.67
GABRA3-204ENST00000535043 FKBP8Q14318 412 aa10.85□□□□□ -0.67
GABRA3-204ENST00000535043 SUPT5HO00267 1087 aaKnown RBP10.85□□□□□ -0.67
GABRA3-204ENST00000535043 LAMC3Q9Y6N6 1575 aa10.84□□□□□ -0.67
GABRA3-204ENST00000535043 CADPSQ9ULU8 1353 aa10.82□□□□□ -0.68
GABRA3-204ENST00000535043 CCDC88BA6NC98 1476 aa10.82□□□□□ -0.68
GABRA3-204ENST00000535043 DCAF8L1A6NGE4 600 aa10.8□□□□□ -0.68
GABRA3-204ENST00000535043 NESP48681 1621 aa10.79□□□□□ -0.68
GABRA3-204ENST00000535043 U3KPZ7 1027 aaPredicted RBP10.78□□□□□ -0.68
GABRA3-204ENST00000535043 CFTRP13569 1480 aa10.78□□□□□ -0.68
GABRA3-204ENST00000535043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.77□□□□□ -0.69
GABRA3-204ENST00000535043 PDS5BQ9NTI5 1447 aa10.75□□□□□ -0.69
GABRA3-204ENST00000535043 AMER1Q5JTC6 1135 aaPredicted RBP10.75□□□□□ -0.69
GABRA3-204ENST00000535043 ERCC6Q03468 1493 aa10.72□□□□□ -0.69
GABRA3-204ENST00000535043 PRDM2Q13029 1718 aa10.71□□□□□ -0.7
GABRA3-204ENST00000535043 KIF21AQ7Z4S6 1674 aa10.68□□□□□ -0.7
GABRA3-204ENST00000535043 FANCD2Q9BXW9 1451 aa10.67□□□□□ -0.7
GABRA3-204ENST00000535043 SAMD1Q6SPF0 538 aaPredicted RBP10.66□□□□□ -0.7
GABRA3-204ENST00000535043 CEP164Q9UPV0 1460 aa10.65□□□□□ -0.7
GABRA3-204ENST00000535043 POTEDQ86YR6 584 aa10.64□□□□□ -0.71
GABRA3-204ENST00000535043 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
GABRA3-204ENST00000535043 MRC2Q9UBG0 1479 aa10.62□□□□□ -0.71
GABRA3-204ENST00000535043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.62□□□□□ -0.71
GABRA3-204ENST00000535043 HNRNPUL2Q1KMD3 747 aaKnown RBP10.62□□□□□ -0.71
GABRA3-204ENST00000535043 CUX2O14529 1486 aa10.61□□□□□ -0.71
GABRA3-204ENST00000535043 SLC24A1O60721 1099 aa10.59□□□□□ -0.71
GABRA3-204ENST00000535043 WDR62O43379 1518 aa10.58□□□□□ -0.72
GABRA3-204ENST00000535043 ABCC8Q09428 1581 aa10.57□□□□□ -0.72
GABRA3-204ENST00000535043 URB2Q14146 1524 aaKnown RBP10.55□□□□□ -0.72
GABRA3-204ENST00000535043 ZNF219Q9P2Y4 722 aaPredicted RBP10.53□□□□□ -0.72
GABRA3-204ENST00000535043 DNMBPQ6XZF7 1577 aa10.52□□□□□ -0.73
GABRA3-204ENST00000535043 TOPBP1Q92547 1522 aa10.51□□□□□ -0.73
GABRA3-204ENST00000535043 CUX1P39880 1505 aa10.46□□□□□ -0.73
GABRA3-204ENST00000535043 WRNQ14191 1432 aaPredicted RBP eCLIP10.45□□□□□ -0.74
GABRA3-204ENST00000535043 IFT140Q96RY7 1462 aa10.44□□□□□ -0.74
GABRA3-204ENST00000535043 POLA1P09884 1462 aaPredicted RBP10.43□□□□□ -0.74
GABRA3-204ENST00000535043 MKRN4PQ13434 485 aaPredicted RBP10.43□□□□□ -0.74
GABRA3-204ENST00000535043 TOP2BQ02880 1626 aa10.43□□□□□ -0.74
GABRA3-204ENST00000535043 BIVM-ERCC5R4GMW8 1640 aa10.43□□□□□ -0.74
GABRA3-204ENST00000535043 FGD5Q6ZNL6 1462 aa10.42□□□□□ -0.74
GABRA3-204ENST00000535043 SOGA1O94964 1423 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms