RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 NISCHQ9Y2I1 1504 aa14.54□□□□□ -0.08
BRCA1-201ENST00000352993 CCDC180Q9P1Z9 1646 aa13.53□□□□□ -0.24
BRCA1-201ENST00000352993 HRCP23327 699 aa12.83□□□□□ -0.36
BRCA1-201ENST00000352993 ABCC9O60706 1549 aa12.74□□□□□ -0.37
BRCA1-201ENST00000352993 SUPT5HO00267 1087 aaKnown RBP12.73□□□□□ -0.37
BRCA1-201ENST00000352993 SHROOM4Q9ULL8 1493 aa12.7□□□□□ -0.38
BRCA1-201ENST00000352993 PCGF6Q9BYE7 350 aa12.7□□□□□ -0.38
BRCA1-201ENST00000352993 PPARGC1BQ86YN6 1023 aaKnown RBP12.68□□□□□ -0.38
BRCA1-201ENST00000352993 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
BRCA1-201ENST00000352993 UNC13AQ9UPW8 1703 aa12.61□□□□□ -0.39
BRCA1-201ENST00000352993 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
BRCA1-201ENST00000352993 NACADO15069 1562 aa12.55□□□□□ -0.4
BRCA1-201ENST00000352993 PELP1Q8IZL8 1130 aaKnown RBP12.5□□□□□ -0.41
BRCA1-201ENST00000352993 DCAF1Q9Y4B6 1507 aa12.37□□□□□ -0.43
BRCA1-201ENST00000352993 CHIC1Q5VXU3 224 aa12.34□□□□□ -0.43
BRCA1-201ENST00000352993 BICRAQ9NZM4 1560 aa12.34□□□□□ -0.43
BRCA1-201ENST00000352993 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
BRCA1-201ENST00000352993 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
BRCA1-201ENST00000352993 TRIM26Q12899 539 aaPredicted RBP12.15□□□□□ -0.46
BRCA1-201ENST00000352993 ZCCHC6Q5VYS8 1495 aaKnown RBP12.13□□□□□ -0.47
BRCA1-201ENST00000352993 ZEB1P37275 1124 aaPredicted RBP12.08□□□□□ -0.48
BRCA1-201ENST00000352993 DCAF8L2P0C7V8 631 aa12.08□□□□□ -0.48
BRCA1-201ENST00000352993 MYT1Q01538 1121 aa12.04□□□□□ -0.48
BRCA1-201ENST00000352993 DNAJC5BQ9UF47 199 aa12.01□□□□□ -0.49
BRCA1-201ENST00000352993 EHMT2Q96KQ7 1210 aa11.91□□□□□ -0.5
BRCA1-201ENST00000352993 ACIN1Q9UKV3 1341 aaKnown RBP11.9□□□□□ -0.5
BRCA1-201ENST00000352993 CC2D2AQ9P2K1 1620 aa11.89□□□□□ -0.51
BRCA1-201ENST00000352993 GTF3C3Q9Y5Q9 886 aa11.88□□□□□ -0.51
BRCA1-201ENST00000352993 NEUROD1Q13562 356 aa11.88□□□□□ -0.51
BRCA1-201ENST00000352993 EIF4G1Q04637 1599 aaKnown RBP11.87□□□□□ -0.51
BRCA1-201ENST00000352993 CENPBP07199 599 aaPredicted RBP11.85□□□□□ -0.51
BRCA1-201ENST00000352993 FAM9AQ8IZU1 332 aaPredicted RBP11.84□□□□□ -0.51
BRCA1-201ENST00000352993 CCER1Q8TC90 406 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-201ENST00000352993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-201ENST00000352993 DIEXFQ68CQ4 756 aaKnown RBP11.73□□□□□ -0.53
BRCA1-201ENST00000352993 SCRIBQ14160 1630 aa11.72□□□□□ -0.53
BRCA1-201ENST00000352993 YTHDC1Q96MU7 727 aaKnown RBP11.7□□□□□ -0.54
BRCA1-201ENST00000352993 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
BRCA1-201ENST00000352993 CECR2Q9BXF3 1484 aa11.64□□□□□ -0.55
BRCA1-201ENST00000352993 TTBK1Q5TCY1 1321 aaPredicted RBP11.62□□□□□ -0.55
BRCA1-201ENST00000352993 PEG3Q9GZU2 1588 aa11.61□□□□□ -0.55
BRCA1-201ENST00000352993 HMGXB3Q12766 1538 aa11.55□□□□□ -0.56
BRCA1-201ENST00000352993 PABPN1Q86U42 306 aaKnown RBP eCLIP11.53□□□□□ -0.56
BRCA1-201ENST00000352993 SMARCA2P51531 1590 aa11.48□□□□□ -0.57
BRCA1-201ENST00000352993 CUX2O14529 1486 aa11.48□□□□□ -0.57
BRCA1-201ENST00000352993 NCAPD3P42695 1498 aa11.48□□□□□ -0.57
BRCA1-201ENST00000352993 SMARCA4P51532 1647 aa11.45□□□□□ -0.58
BRCA1-201ENST00000352993 ZNF316A6NFI3 1004 aaPredicted RBP11.44□□□□□ -0.58
BRCA1-201ENST00000352993 THOC2Q8NI27 1593 aaKnown RBP11.42□□□□□ -0.58
BRCA1-201ENST00000352993 MIER1Q8N108 512 aa11.39□□□□□ -0.59
BRCA1-201ENST00000352993 PRDM2Q13029 1718 aa11.33□□□□□ -0.6
BRCA1-201ENST00000352993 LAMC3Q9Y6N6 1575 aa11.33□□□□□ -0.6
BRCA1-201ENST00000352993 ATAD2BQ9ULI0 1458 aa11.32□□□□□ -0.6
BRCA1-201ENST00000352993 BCL11AQ9H165 835 aa11.3□□□□□ -0.6
BRCA1-201ENST00000352993 BAZ1AQ9NRL2 1556 aaPredicted RBP11.3□□□□□ -0.6
BRCA1-201ENST00000352993 ANP32EQ9BTT0 268 aa11.26□□□□□ -0.61
BRCA1-201ENST00000352993 KIF21AQ7Z4S6 1674 aa11.25□□□□□ -0.61
BRCA1-201ENST00000352993 HNRNPUL2Q1KMD3 747 aaKnown RBP11.25□□□□□ -0.61
BRCA1-201ENST00000352993 RSF1Q96T23 1441 aaPredicted RBP11.23□□□□□ -0.61
BRCA1-201ENST00000352993 SUPT16HQ9Y5B9 1047 aaKnown RBP11.22□□□□□ -0.61
BRCA1-201ENST00000352993 DNAJC5Q9H3Z4 198 aa11.18□□□□□ -0.62
BRCA1-201ENST00000352993 WDR62O43379 1518 aa11.18□□□□□ -0.62
BRCA1-201ENST00000352993 BCANQ96GW7 911 aa11.17□□□□□ -0.62
BRCA1-201ENST00000352993 TSHZ2Q9NRE2 1034 aa11.17□□□□□ -0.62
BRCA1-201ENST00000352993 UBTFP17480 764 aaKnown RBP11.17□□□□□ -0.62
BRCA1-201ENST00000352993 CSRNP3Q8WYN3 585 aa11.16□□□□□ -0.62
BRCA1-201ENST00000352993 CLSPNQ9HAW4 1339 aa11.1□□□□□ -0.63
BRCA1-201ENST00000352993 MROH2BQ7Z745 1585 aa11.09□□□□□ -0.63
BRCA1-201ENST00000352993 BAZ1BQ9UIG0 1483 aaKnown RBP11.08□□□□□ -0.64
BRCA1-201ENST00000352993 CEP162Q5TB80 1403 aa11.06□□□□□ -0.64
BRCA1-201ENST00000352993 APLP2Q06481 763 aa11.05□□□□□ -0.64
BRCA1-201ENST00000352993 RANGAP1P46060 587 aaPredicted RBP11.04□□□□□ -0.64
BRCA1-201ENST00000352993 FKBP8Q14318 412 aa11.02□□□□□ -0.64
BRCA1-201ENST00000352993 NESP48681 1621 aa11.02□□□□□ -0.65
BRCA1-201ENST00000352993 WIZO95785 1651 aa11□□□□□ -0.65
BRCA1-201ENST00000352993 NEFLP07196 543 aa11□□□□□ -0.65
BRCA1-201ENST00000352993 WRNQ14191 1432 aaPredicted RBP eCLIP10.99□□□□□ -0.651e-6■■■■■ 58.5
BRCA1-201ENST00000352993 ERICH6Q7L0X2 663 aa10.99□□□□□ -0.65
BRCA1-201ENST00000352993 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
BRCA1-201ENST00000352993 TOP2AP11388 1531 aaKnown RBP10.98□□□□□ -0.65
BRCA1-201ENST00000352993 WDR97A6NE52 1622 aa10.96□□□□□ -0.66
BRCA1-201ENST00000352993 ERCC6Q03468 1493 aa10.96□□□□□ -0.66
BRCA1-201ENST00000352993 ITGAEP38570 1179 aa10.95□□□□□ -0.66
BRCA1-201ENST00000352993 RBM19Q9Y4C8 960 aaKnown RBP10.95□□□□□ -0.66
BRCA1-201ENST00000352993 CFTRP13569 1480 aa10.94□□□□□ -0.66
BRCA1-201ENST00000352993 KCNH8Q96L42 1107 aa10.93□□□□□ -0.66
BRCA1-201ENST00000352993 TNIKQ9UKE5 1360 aa10.93□□□□□ -0.66
BRCA1-201ENST00000352993 PDS5BQ9NTI5 1447 aa10.93□□□□□ -0.66
BRCA1-201ENST00000352993 SOGA1O94964 1423 aa10.9□□□□□ -0.66
BRCA1-201ENST00000352993 CADPSQ9ULU8 1353 aa10.89□□□□□ -0.67
BRCA1-201ENST00000352993 CCDC88BA6NC98 1476 aa10.89□□□□□ -0.67
BRCA1-201ENST00000352993 ABCC8Q09428 1581 aa10.88□□□□□ -0.67
BRCA1-201ENST00000352993 TRIM52Q96A61 297 aa10.85□□□□□ -0.67
BRCA1-201ENST00000352993 DDX10Q13206 875 aaKnown RBP10.83□□□□□ -0.68
BRCA1-201ENST00000352993 TARBP1Q13395 1621 aaKnown RBP10.82□□□□□ -0.68
BRCA1-201ENST00000352993 URB2Q14146 1524 aaKnown RBP10.82□□□□□ -0.68
BRCA1-201ENST00000352993 CEP164Q9UPV0 1460 aa10.81□□□□□ -0.68
BRCA1-201ENST00000352993 PRKCSHP14314 528 aaPredicted RBP10.81□□□□□ -0.68
BRCA1-201ENST00000352993 RUSC2Q8N2Y8 1516 aa10.81□□□□□ -0.68
BRCA1-201ENST00000352993 GOLGA3Q08378 1498 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms