RNA–Protein interactions for RNA: ENST00000339844.6

ZNF28-201, Transcript of zinc finger protein 28, humanhuman

TSL 4 BASIC

Gene ZNF28, Length 650 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF28-201ENST00000339844 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
ZNF28-201ENST00000339844 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
ZNF28-201ENST00000339844 PHF23Q9BUL5 403 aaPredicted RBP15.1■□□□□ 0.01
ZNF28-201ENST00000339844 SENP3Q9H4L4 574 aaPredicted RBP14.83□□□□□ -0.04
ZNF28-201ENST00000339844 NISCHQ9Y2I1 1504 aa14.46□□□□□ -0.09
ZNF28-201ENST00000339844 PLPPR3Q6T4P5 718 aa14.14□□□□□ -0.15
ZNF28-201ENST00000339844 POTEDQ86YR6 584 aa13.84□□□□□ -0.19
ZNF28-201ENST00000339844 FOXD1Q16676 465 aa13.79□□□□□ -0.2
ZNF28-201ENST00000339844 ADRA2BP18089 450 aa13.34□□□□□ -0.27
ZNF28-201ENST00000339844 PPP6R1Q9UPN7 881 aa13.27□□□□□ -0.29
ZNF28-201ENST00000339844 MSH5O43196 834 aa13.22□□□□□ -0.29
ZNF28-201ENST00000339844 PIAS4Q8N2W9 510 aaPredicted RBP13.03□□□□□ -0.32
ZNF28-201ENST00000339844 CCDC180Q9P1Z9 1646 aa12.79□□□□□ -0.36
ZNF28-201ENST00000339844 ABCC9O60706 1549 aa12.54□□□□□ -0.4
ZNF28-201ENST00000339844 PPP4R3CPQ6ZMV5 832 aa12.47□□□□□ -0.41
ZNF28-201ENST00000339844 KCNA4P22459 653 aa12.38□□□□□ -0.43
ZNF28-201ENST00000339844 SCAF1Q9H7N4 1312 aaKnown RBP12.33□□□□□ -0.44
ZNF28-201ENST00000339844 NCBP3Q53F19 620 aaKnown RBP12.29□□□□□ -0.44
ZNF28-201ENST00000339844 DCAF8L2P0C7V8 631 aa12.08□□□□□ -0.48
ZNF28-201ENST00000339844 CNKSR2Q8WXI2 1034 aa12.08□□□□□ -0.48
ZNF28-201ENST00000339844 ZCCHC6Q5VYS8 1495 aaKnown RBP12.07□□□□□ -0.48
ZNF28-201ENST00000339844 NACADO15069 1562 aa12.03□□□□□ -0.48
ZNF28-201ENST00000339844 RB1CC1Q8TDY2 1594 aa12.03□□□□□ -0.48
ZNF28-201ENST00000339844 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
ZNF28-201ENST00000339844 NPM3O75607 178 aaKnown RBP11.99□□□□□ -0.49
ZNF28-201ENST00000339844 MYO15BQ96JP2 1530 aa11.97□□□□□ -0.49
ZNF28-201ENST00000339844 DCAF1Q9Y4B6 1507 aa11.95□□□□□ -0.5
ZNF28-201ENST00000339844 SLC4A1APQ9BWU0 796 aaKnown RBP11.89□□□□□ -0.51
ZNF28-201ENST00000339844 EHMT2Q96KQ7 1210 aa11.82□□□□□ -0.52
ZNF28-201ENST00000339844 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
ZNF28-201ENST00000339844 RNF216Q9NWF9 866 aaPredicted RBP11.78□□□□□ -0.52
ZNF28-201ENST00000339844 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.52
ZNF28-201ENST00000339844 PABPN1Q86U42 306 aaKnown RBP eCLIP11.75□□□□□ -0.53
ZNF28-201ENST00000339844 SCRIBQ14160 1630 aa11.73□□□□□ -0.53
ZNF28-201ENST00000339844 BICRAQ9NZM4 1560 aa11.71□□□□□ -0.53
ZNF28-201ENST00000339844 CACNB1Q02641 598 aaPredicted RBP11.71□□□□□ -0.53
ZNF28-201ENST00000339844 HOXD11P31277 338 aaPredicted RBP11.63□□□□□ -0.55
ZNF28-201ENST00000339844 SHROOM4Q9ULL8 1493 aa11.52□□□□□ -0.56
ZNF28-201ENST00000339844 DNAJC5BQ9UF47 199 aa11.51□□□□□ -0.57
ZNF28-201ENST00000339844 DCAF8L1A6NGE4 600 aa11.47□□□□□ -0.57
ZNF28-201ENST00000339844 CSRNP3Q8WYN3 585 aa11.47□□□□□ -0.57
ZNF28-201ENST00000339844 EIF4G1Q04637 1599 aaKnown RBP11.38□□□□□ -0.59
ZNF28-201ENST00000339844 FOXD4L1Q9NU39 408 aa11.37□□□□□ -0.59
ZNF28-201ENST00000339844 ZBTB22O15209 634 aa11.33□□□□□ -0.6
ZNF28-201ENST00000339844 CC2D2AQ9P2K1 1620 aa11.32□□□□□ -0.6
ZNF28-201ENST00000339844 CECR2Q9BXF3 1484 aa11.31□□□□□ -0.6
ZNF28-201ENST00000339844 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
ZNF28-201ENST00000339844 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.23□□□□□ -0.61
ZNF28-201ENST00000339844 SMARCA4P51532 1647 aa11.21□□□□□ -0.61
ZNF28-201ENST00000339844 BAZ1AQ9NRL2 1556 aaPredicted RBP11.19□□□□□ -0.62
ZNF28-201ENST00000339844 MROH2BQ7Z745 1585 aa11.17□□□□□ -0.62
ZNF28-201ENST00000339844 RNF39Q9H2S5 420 aa11.16□□□□□ -0.62
ZNF28-201ENST00000339844 ATAD2BQ9ULI0 1458 aa11.16□□□□□ -0.62
ZNF28-201ENST00000339844 MYCNP04198 464 aaPredicted RBP11.13□□□□□ -0.63
ZNF28-201ENST00000339844 NCAPD3P42695 1498 aa11.12□□□□□ -0.63
ZNF28-201ENST00000339844 SMARCA2P51531 1590 aa11.1□□□□□ -0.63
ZNF28-201ENST00000339844 PEG3Q9GZU2 1588 aa11.09□□□□□ -0.63
ZNF28-201ENST00000339844 RSF1Q96T23 1441 aaPredicted RBP11.07□□□□□ -0.64
ZNF28-201ENST00000339844 HMGXB3Q12766 1538 aa11.06□□□□□ -0.64
ZNF28-201ENST00000339844 BAZ1BQ9UIG0 1483 aaKnown RBP11.05□□□□□ -0.64
ZNF28-201ENST00000339844 WIZO95785 1651 aa11.04□□□□□ -0.64
ZNF28-201ENST00000339844 C1QBPQ07021 282 aaKnown RBP11.01□□□□□ -0.65
ZNF28-201ENST00000339844 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11□□□□□ -0.65
ZNF28-201ENST00000339844 HNRNPUL2Q1KMD3 747 aaKnown RBP11□□□□□ -0.65
ZNF28-201ENST00000339844 SAMD1Q6SPF0 538 aaPredicted RBP10.95□□□□□ -0.66
ZNF28-201ENST00000339844 ATXN8OSP0DMR3 200 aa10.94□□□□□ -0.66
ZNF28-201ENST00000339844 U3KPZ7 1027 aaPredicted RBP10.94□□□□□ -0.66
ZNF28-201ENST00000339844 TOP2AP11388 1531 aaKnown RBP10.91□□□□□ -0.66
ZNF28-201ENST00000339844 NESP48681 1621 aa10.88□□□□□ -0.67
ZNF28-201ENST00000339844 APLP2Q06481 763 aa10.88□□□□□ -0.67
ZNF28-201ENST00000339844 SUPT5HO00267 1087 aaKnown RBP10.82□□□□□ -0.68
ZNF28-201ENST00000339844 CADPSQ9ULU8 1353 aa10.81□□□□□ -0.68
ZNF28-201ENST00000339844 CCDC88BA6NC98 1476 aa10.81□□□□□ -0.68
ZNF28-201ENST00000339844 LAMC3Q9Y6N6 1575 aa10.8□□□□□ -0.68
ZNF28-201ENST00000339844 ERCC6Q03468 1493 aa10.77□□□□□ -0.69
ZNF28-201ENST00000339844 POTEHQ6S545 545 aa10.76□□□□□ -0.69
ZNF28-201ENST00000339844 CFTRP13569 1480 aa10.75□□□□□ -0.69
ZNF28-201ENST00000339844 ATF5Q9Y2D1 282 aaPredicted RBP10.73□□□□□ -0.69
ZNF28-201ENST00000339844 PDS5BQ9NTI5 1447 aa10.73□□□□□ -0.69
ZNF28-201ENST00000339844 KIF21AQ7Z4S6 1674 aa10.71□□□□□ -0.69
ZNF28-201ENST00000339844 FANCD2Q9BXW9 1451 aa10.68□□□□□ -0.7
ZNF28-201ENST00000339844 THOC2Q8NI27 1593 aaKnown RBP10.67□□□□□ -0.7
ZNF28-201ENST00000339844 CAPN15O75808 1086 aa10.66□□□□□ -0.7
ZNF28-201ENST00000339844 CEP164Q9UPV0 1460 aa10.65□□□□□ -0.7
ZNF28-201ENST00000339844 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
ZNF28-201ENST00000339844 CUX2O14529 1486 aa10.63□□□□□ -0.71
ZNF28-201ENST00000339844 MRC2Q9UBG0 1479 aa10.63□□□□□ -0.71
ZNF28-201ENST00000339844 PRDM2Q13029 1718 aa10.62□□□□□ -0.71
ZNF28-201ENST00000339844 ZNF219Q9P2Y4 722 aaPredicted RBP10.62□□□□□ -0.71
ZNF28-201ENST00000339844 WDR62O43379 1518 aa10.6□□□□□ -0.71
ZNF28-201ENST00000339844 URB2Q14146 1524 aaKnown RBP10.59□□□□□ -0.71
ZNF28-201ENST00000339844 SPINK5Q9NQ38 1064 aaPredicted RBP10.59□□□□□ -0.71
ZNF28-201ENST00000339844 TOPBP1Q92547 1522 aa10.53□□□□□ -0.72
ZNF28-201ENST00000339844 DNMBPQ6XZF7 1577 aa10.5□□□□□ -0.73
ZNF28-201ENST00000339844 CUX1P39880 1505 aa10.48□□□□□ -0.73
ZNF28-201ENST00000339844 ABCC8Q09428 1581 aa10.48□□□□□ -0.73
ZNF28-201ENST00000339844 POLA2Q14181 598 aa10.47□□□□□ -0.73
ZNF28-201ENST00000339844 FKBP8Q14318 412 aa10.45□□□□□ -0.74
ZNF28-201ENST00000339844 POLA1P09884 1462 aaPredicted RBP10.44□□□□□ -0.74
ZNF28-201ENST00000339844 ABCB7O75027 752 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 279.5 ms