Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 AC026471.1-201ENST00000564629 3026 ntBASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 DPP3P2-201ENST00000416030 1696 ntBASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 AC123595.1-201ENST00000440769 1046 ntBASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 FAM21FP-204ENST00000608637 956 ntBASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.02■□□□□ 0.32
CHMP1AQ9HD42 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHMP1AQ9HD42 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHMP1AQ9HD42 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 YBX1P1-201ENST00000445822 960 ntBASIC17■□□□□ 0.31
CHMP1AQ9HD42 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 CDV3P1-201ENST00000471403 739 ntBASIC17■□□□□ 0.31
CHMP1AQ9HD42 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CHMP1AQ9HD42 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17■□□□□ 0.31
CHMP1AQ9HD42 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.99■□□□□ 0.31
CHMP1AQ9HD42 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms