Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 AL390719.1-204ENST00000412397 1219 ntBASIC19.75■□□□□ 0.75
VPS13AQ96RL7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 AC011506.1-201ENST00000474329 610 ntBASIC19.75■□□□□ 0.75
VPS13AQ96RL7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS13AQ96RL7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CCR12P-201ENST00000446203 998 ntBASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 AC009078.2-202ENST00000463353 338 ntBASIC19.74■□□□□ 0.75
VPS13AQ96RL7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13AQ96RL7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 AL023803.3-201ENST00000615559 522 ntBASIC19.73■□□□□ 0.75
VPS13AQ96RL7 AC096733.2-201ENST00000609937 1394 ntBASIC19.73■□□□□ 0.75
VPS13AQ96RL7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS13AQ96RL7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13AQ96RL7 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 CKBP1-201ENST00000565489 1086 ntBASIC19.71■□□□□ 0.75
VPS13AQ96RL7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS13AQ96RL7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms