Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP9XQ93008 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.41■□□□□ 0.38
USP9XQ93008 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.4■□□□□ 0.38
USP9XQ93008 AL441883.1-201ENST00000566170 1045 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.4■□□□□ 0.38
USP9XQ93008 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.4■□□□□ 0.38
USP9XQ93008 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP9XQ93008 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
USP9XQ93008 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 UNC93B7-201ENST00000509439 705 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.4■□□□□ 0.38
USP9XQ93008 MIR3180-1-201ENST00000580374 94 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 MIR3180-3-201ENST00000584616 94 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 AP000692.2-201ENST00000608391 879 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 AC010653.2-201ENST00000623505 997 ntBASIC17.4■□□□□ 0.38
USP9XQ93008 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP9XQ93008 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP9XQ93008 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP9XQ93008 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
USP9XQ93008 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
USP9XQ93008 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.39■□□□□ 0.38
USP9XQ93008 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.39■□□□□ 0.38
USP9XQ93008 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
USP9XQ93008 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.39■□□□□ 0.38
USP9XQ93008 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.39■□□□□ 0.37
USP9XQ93008 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
USP9XQ93008 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
USP9XQ93008 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP9XQ93008 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USP9XQ93008 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP9XQ93008 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP9XQ93008 AC008040.2-201ENST00000461049 708 ntBASIC17.39■□□□□ 0.37
USP9XQ93008 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.39■□□□□ 0.37
USP9XQ93008 AL136038.3-201ENST00000561909 1096 ntBASIC17.39■□□□□ 0.37
USP9XQ93008 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.39■□□□□ 0.37
USP9XQ93008 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP9XQ93008 C1orf229-201ENST00000623686 2258 ntBASIC17.39■□□□□ 0.37
USP9XQ93008 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.39■□□□□ 0.37
USP9XQ93008 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.39■□□□□ 0.37
USP9XQ93008 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP9XQ93008 AL845331.1-201ENST00000424978 1190 ntBASIC17.38■□□□□ 0.37
USP9XQ93008 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP9XQ93008 KRT8P36-201ENST00000489121 1440 ntBASIC17.38■□□□□ 0.37
USP9XQ93008 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP9XQ93008 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.38■□□□□ 0.37
USP9XQ93008 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.38■□□□□ 0.37
USP9XQ93008 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.38■□□□□ 0.37
USP9XQ93008 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
USP9XQ93008 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP9XQ93008 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.37■□□□□ 0.37
USP9XQ93008 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.37■□□□□ 0.37
USP9XQ93008 MIR3652-201ENST00000579335 131 ntBASIC17.37■□□□□ 0.37
USP9XQ93008 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
USP9XQ93008 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.37■□□□□ 0.37
USP9XQ93008 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 AC127496.7-201ENST00000625110 1798 ntBASIC17.37■□□□□ 0.37
USP9XQ93008 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 AC011484.1-201ENST00000377652 1995 ntBASIC17.37■□□□□ 0.37
USP9XQ93008 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.37■□□□□ 0.37
USP9XQ93008 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.37■□□□□ 0.37
USP9XQ93008 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USP9XQ93008 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP9XQ93008 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.36■□□□□ 0.37
USP9XQ93008 AC092183.1-201ENST00000469884 875 ntBASIC17.36■□□□□ 0.37
USP9XQ93008 AL512604.3-201ENST00000569583 964 ntBASIC17.36■□□□□ 0.37
USP9XQ93008 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.36■□□□□ 0.37
USP9XQ93008 AL023973.1-201ENST00000624619 620 ntBASIC17.36■□□□□ 0.37
USP9XQ93008 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP9XQ93008 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.36■□□□□ 0.37
USP9XQ93008 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.36■□□□□ 0.37
USP9XQ93008 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.36■□□□□ 0.37
USP9XQ93008 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms