Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 RARRES2P6-201ENST00000567333 442 ntBASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
ATG4AQ8WYN0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATG4AQ8WYN0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 AC069236.1-201ENST00000604339 616 ntBASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 BID-214ENST00000617586 542 ntTSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
ATG4AQ8WYN0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.52■□□□□ 0.87
ATG4AQ8WYN0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.52■□□□□ 0.87
ATG4AQ8WYN0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
ATG4AQ8WYN0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ATG4AQ8WYN0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ATG4AQ8WYN0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms