Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13DQ5THJ4 AK4P3-201ENST00000418260 669 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 KRT18P48-201ENST00000434763 852 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC063952.2-201ENST00000498792 1227 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC097488.1-201ENST00000507834 756 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AL359075.1-203ENST00000462729 1002 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC096733.2-201ENST00000609937 1394 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC011558.1-201ENST00000623459 338 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 ATP5G1P1-201ENST00000448724 379 ntBASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13DQ5THJ4 KRT8P17-201ENST00000453110 1448 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 HLA-G-202ENST00000376815 851 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 HLA-G-203ENST00000376818 1127 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 AC244015.2-201ENST00000616358 1861 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 AL390719.1-204ENST00000412397 1219 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 FBXW4P1-201ENST00000426721 2239 ntBASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13DQ5THJ4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 HLA-A-209ENST00000638375 975 ntBASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 YBX1P2-201ENST00000489612 999 ntBASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13DQ5THJ4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms