Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AL353807.1-201ENST00000427475 662 ntBASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 NUDT16P1-203ENST00000513809 620 ntBASIC19.07■□□□□ 0.64
COL28A1Q2UY09 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AC010947.1-201ENST00000623454 693 ntBASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 CRYGFP-201ENST00000418459 633 ntBASIC19.06■□□□□ 0.64
COL28A1Q2UY09 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 AC006011.2-201ENST00000621313 1158 ntBASIC19.06■□□□□ 0.64
COL28A1Q2UY09 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL28A1Q2UY09 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 AC010203.1-204ENST00000548782 407 ntBASIC19.05■□□□□ 0.64
COL28A1Q2UY09 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL28A1Q2UY09 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 LIN28AP1-201ENST00000429574 405 ntBASIC19.04■□□□□ 0.64
COL28A1Q2UY09 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 AC073195.1-201ENST00000607241 877 ntBASIC19.04■□□□□ 0.64
COL28A1Q2UY09 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL28A1Q2UY09 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 AF106564.1-201ENST00000607058 2553 ntBASIC19.03■□□□□ 0.64
COL28A1Q2UY09 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 ATP5G1P1-201ENST00000448724 379 ntBASIC19.03■□□□□ 0.64
COL28A1Q2UY09 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms